RetrogeneDB ID: retro_mmur_1246

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_36005:3837..4866(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RARS
• Ensembl ID: ENSMICG00000004771
• Aliases: None
• Description: arginyl-tRNA synthetase [Source:HGNC Symbol;Acc:9870]

Sequence

>retro_mmur_1246
TTTAATAAAATCTACAATGCATTGGCCATCTCTTTTTAGAGAGAGTGGGGAATCGTTCTATCAAGATAGGATGGATGATG
TTGTAAAGGAATTTGAAAATAGAGGATTTGTGCAAGCGGATGATGGCAGAAAGATCGTGTTTGTCCCAGGGTGTTCCATA
CCGTTAACCATAGTAAAATCAGATGGGAGAGTATACCTATGATACATCTGACCTGGCTGCTCTTAAGCAAAGACTATTTG
AGGAAAAAGCAGATATGATTATCTATGTGGTGGACAATGGACAATCTGTGTACTTCCAGGCAATATTTGCTGCTGCTCAG
ATGATCAGTTGGTATGACCCTAAAGTAACTCCAGTGACCCATGCTGGATTTGGTGTGGTGCTAGGGGAAGACAAGAAGAA
GTTTAAAACACATTCAGGTAAAACAGTGCGCCTCATAGACCTTCTGGAAGAAGGACTAAAATGATCCATGGACAAATTGA
AGGAAAAAGAAAGAGACAAGGTCTTAACTGCAGAGGAATTGAAGGCTGCTCAGACATCCATTGCTTATGGCTATATCAAA
TATGCTGACCTTTCCCATAGCCAGTTGAATGACTACATCTTCTCCTTTGATAAGATGCTGGATGATAAAGGAAACACAGC
TGCTTACTTGTTGTATGCCTTCACGAGAATCAGGTCTATTGCACGCCTGGGCCAGTATCAATGAAGAGATGCTCCAGATA
GCTGCTCGAGAGACCAAGATCATTTTGGACCACGAAAAGGAATGGAAATGGGGCTGGTGCATTTTACAATTCCCTGAGAT
TGTGCAAAAAATTTTAGATGACTTATTTCTCCACACTCTCTGTGATTACATTTATGAGCTGGCAACTACTTTCACAGAGT
TCTATGATAGCTGCTACTGTGTGGAGAAAGATCAACAGACTAGAAAAATATTGAAGGTGAACATTTGGTGTATGCTGTTT
GTGTGAGGCGGTAGCTGCTGTCATGGCCAAGGGGTTTGATATCCTGGGAATAAACCTGTCCAAAGGATG

Alignment

ORF - retro_mmur_1246 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.3 %
• Parental protein coverage: 53.02 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 5

Retrocopy - Parental Gene Alignment:

Parental  FNKIYDALDISL-IERGESFYQDRMDDVVKEFENKXXXXXXXXXXXXXXPGCSIPLTIVKSDGG-YTYDT
          FNKIY.AL.IS...E.GESFYQDRMDDVVKEFEN...............PGCSIPLTIVKSDG..YTYDT
Retrocopy FNKIYNALAISF>RESGESFYQDRMDDVVKEFENRGFVQADDGRKIVFVPGCSIPLTIVKSDGR>YTYDT

Parental  SDLAAIKQRLFEEKADMIIYVVDSGQSVHFQTIFAAAQMIGWYDPKVTRVTHAGFGVVLGEDKKKFKTRS
          SDLAA.KQRLFEEKADMIIYVVD.GQSV.FQ.IFAAAQMI.WYDPKVT.VTHAGFGVVLGEDKKKFKT.S
Retrocopy SDLAALKQRLFEEKADMIIYVVDNGQSVYFQAIFAAAQMISWYDPKVTPVTHAGFGVVLGEDKKKFKTHS

Parental  GETVRLIDLLEEGLKRSMDKLKEKERDKVLNAEELKAAQTSVAYGCIKYADLSHSRLNDYIFSFDKMLDD
          G.TVRLIDLLEEGLK.SMDKLKEKERDKVL.AEELKAAQTS.AYG.IKYADLSHS.LNDYIFSFDKMLDD
Retrocopy GKTVRLIDLLEEGLK*SMDKLKEKERDKVLTAEELKAAQTSIAYGYIKYADLSHSQLNDYIFSFDKMLDD

Parental  RGNTAAYLLYAFTRIRSIARL-ANINEEMLQKAARETKINLDHEKEWKLGRCILRFPEIVQKILDDLFLH
          .GNTAAYLLYAFTRIRSIARL.A.INEEMLQ.AARETKI.LDHEKEWK.G.CIL.FPEIVQKILDDLFLH
Retrocopy KGNTAAYLLYAFTRIRSIARL>ASINEEMLQIAARETKIILDHEKEWKWGWCILQFPEIVQKILDDLFLH

Parental  TLCDYIYELATTFTEFYDSCYCVEKDRQTGKILKVNMGRML-LCEAVAAVMAKGFDILGI-KPVQRM
          TLCDYIYELATTFTEFYDSCYCVEKD.QT.KILKVN...ML.LCEAVAAVMAKGFDILGI.KPVQRM
Retrocopy TLCDYIYELATTFTEFYDSCYCVEKDQQTRKILKVNIWCML>LCEAVAAVMAKGFDILGI<KPVQRM

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1246 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1246 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000004771	1 retrocopy	retro_mmur_1246 ,