RetrogeneDB ID: retro_mmur_1267

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_37699:3339..3579(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000011349
• Aliases: None
• Description: None

Sequence

>retro_mmur_1267
TCATCCTGCAGCTTCTTCCGGGGCAAGGCTGTCCAGAACCACTTCACGCCGGGTATCTGCGCGTGAGCCAAGTGTGGCTT
CGAGCTGTTCTCCAACCTCTCCAAATACACACACTCGTCCCCATGGCTGGCATTCATGGAGACCACCCAGCCAACAGCAT
GCTAAGCGTCCAGAGTGCCACCGAGCTGACCTGAAGCACTGGAGGCGTCCTGTGGCAGGTGCGGCAACAGGCTGGGCCAT

Alignment

ORF - retro_mmur_1267 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 61.25 %
• Parental protein coverage: 84.04 %
• Number of stop codons detected: 3
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SFCSFFGGEVFQNHFEPGIYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSV-AKRPEFNRPEALKVS
          S.CSFF.G...QNHF.PGI...AKCG.ELFS..SKY.HSSPW.AF.ET.......A.R.....PEAL..S
Retrocopy SSCSFFRGKAVQNHFTPGICA*AKCGFELFSNLSKYTHSSPWLAFMETTQPTAC*ASRVPPS*PEALEAS

Parental  CGRCGNGLGH
          CGRCGN.LGH
Retrocopy CGRCGNRLGH

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1267 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1267 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 5 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000008487	1 retrocopy	retro_amel_1468,
Homo sapiens	ENSG00000198736	1 retrocopy	retro_hsap_2057,
Microcebus murinus	ENSMICG00000011349	1 retrocopy	retro_mmur_1267 ,
Macaca mulatta	ENSMMUG00000007936	1 retrocopy	retro_mmul_1402,
Pan troglodytes	ENSPTRG00000024355	1 retrocopy	retro_ptro_1372,