RetrogeneDB ID: | retro_mmur_1279 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_38693:4392..5084(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PPM1H | ||
| Ensembl ID: | ENSMICG00000000256 | ||
| Aliases: | None | ||
| Description: | protein phosphatase, Mg2+/Mn2+ dependent, 1H [Source:HGNC Symbol;Acc:18583] |
Retrocopy-Parental alignment summary:
>retro_mmur_1279
GTTATCAACGCTGGGAAGAGCACACACACCGAAAACCAAGCCAGCTGTGCGGTGCTCACTGTGAAGAAGAAAGCAGGGGT
CATTACCTCAACCCCAAACAGGAACTCATCCAAGAGACAGTCTTCCCTTCCCAACGGGGAAGGACTGCAACTAAGGGAGA
ACTCGGGAAATCGAGGGCGTCTCCTGCCACTACTGGTCGCTGTTTCGAAGGTCACGCGGGGTCCAGGGCCGCCGTGGTCC
CGTCGCGCCTGCTGCAGCAGCACGTCATGGAGCAGCTGCAGGACATCCTGGAGATCCTGCCGCCCACCTGCCTGGGGGAG
GAGCCCGAGCACACGCCCGCCAACAGCCACGCTCTAACGCGGGCCGCCTAGCTGCGCGGAGGCGTGGGCGCCCCCGGCTC
CCCCGGCACCCCGCCCACGCGCTTCGTCACCGAGAAGAAGATTCCACACGAGTGGCTAGTCATCGGCGCTCTTGAAAGCG
CGTTCAAGGAAATGGACCTACAAATAGAATGAGAGAGGAGTTCATACAATATATCTGGCGGCTGCACAGCCCTCATTGTG
GTTTGCCTTTTGGGGAAGCTATATGTCGCAAATGCTGGGGACAGCAGGGCCATAATCATCAGAAATGGAGAAATCATCCC
CCTGTCTTCAGAATTCACCCCCGAGACAGAGCGCCAGCGACTTCAGTGCCTG
ORF - retro_mmur_1279 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.87 % |
| Parental protein coverage: | 54.63 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | VINAGKSTHNEDQASCEVLTVKKKAGAITSTPNRNSSKRRSSLPNGEGLQLRENSEN-EGVSCHYWSLF- |
| VINAGKSTH.E.QASC.VLTVKKKAG.ITSTPNRNSSKR.SSLPNGEGLQLRENS.N.EGVSCHYWSLF. | |
| Retrocopy | VINAGKSTHTENQASCAVLTVKKKAGVITSTPNRNSSKRQSSLPNGEGLQLRENSGN>EGVSCHYWSLF> |
| Parental | DGHAGSGAAVVASRLLQQHVTEQLQDIVEILKNSAVLPPTCLGEEPEHAPANSRTLTRAASLRGGVGAPG |
| .GHAGS.AAVV.SRLLQQHV.........IL.....LPPTCLGEEPEH.PANS..LTRAA.LRGGVGAPG | |
| Retrocopy | EGHAGSRAAVVPSRLLQQHV---MEQLQDILE---ILPPTCLGEEPEHTPANSHALTRAA*LRGGVGAPG |
| Parental | SPSTPPTRFFTEKKIPHECLVVGALESAFKEMDLQIERERSSYNISGGCTALIVVCLLGKLYVANAGDSR |
| SP.TPPTRF.TEKKIPHE.LV.GALESAFKEMDLQIE.ERSSYNISGGCTALIVVCLLGKLYVANAGDSR | |
| Retrocopy | SPGTPPTRFVTEKKIPHEWLVIGALESAFKEMDLQIE*ERSSYNISGGCTALIVVCLLGKLYVANAGDSR |
| Parental | AIIIRNGEIIPMSSEFTPETERQRLQYL |
| AIIIRNGEIIP.SSEFTPETERQRLQ.L | |
| Retrocopy | AIIIRNGEIIPLSSEFTPETERQRLQCL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1279 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1279 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000000256 | 1 retrocopy |
retro_mmur_1279 ,
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