RetrogeneDB ID: retro_mmur_1287

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_3969:84081..85149(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SGK2
• Ensembl ID: ENSMICG00000015157
• Aliases: None
• Description: serum/glucocorticoid regulated kinase 2 [Source:HGNC Symbol;Acc:13900]

Sequence

>retro_mmur_1287
CCACCAAGTCCTTCTCAGCAAATCAACCTTGGCCTGTCATCCAACCCTCATGCTAACCCATCTGACTTTCACTTCTTGAA
AGTGATTGGGAAAGGCAGTTTTGGCAAGGTTCTTCTAGCAAGACACAAGGCAGAAGAAGTGTTTTGTGCAGTCAAAGGTT
TACAGAAGAAAGCAATCCTGAAAAAGAAGGAGGAGAAGCATATTATGTCAGAGCGGAATGTTTTATTGGAGAATGTGAAA
CACCCTTTCCTGGTGGGCCTTCACTTCTCTTTCCAGACTGCTGATAAACTGCACTTTGTCCTAGACTCCATTAATGGTGG
AGAGTTTTTCTACCATCTCCAGAGAGAACGCTGCTTTCTGGAACCACGGGCTTGTTTCTATGCTGCTGAAATAGCCAGTG
CCTTGGGTTACCTGCACTCTCTGAACATCGTGTATAGAGACTTAAAACCCGAGAATATTTTGCTAGATTCCCAGGGACAT
ATTGTCCTTACTGACTTTGGACTCTGCAAGGAAAACATTGAGCACAATGGCACGACATCTACCTTCTGTGGCACACCTGA
GTACCCCGCACCTGAGGTGCCGAGTAAGCAGCCCTGCGACAGGACCGTGGACTGGTGGTGCCTGGGGGCCGTCTTGTATG
AGATGCTCTATGGCCTGCCTCCTTTTTATAGCTGAAACACAGCTGAGATGTACGACAACATTCTGAACAAGCCCTTCCTG
CTGAAACCAAATATTATGAATTCTGCAAGACACATCTTGGAGGGCCTGCTGCAGAAGGACAGGGCAAAGTGGCTGAGGGC
CAAGGACGACTTTATGGAGATCAAGAGTCATGTCTTCTTCTCCCTAATTAACTGGGATGATCTCATTAATAAGAAGAGTA
CTCCTCCTTTTAACCCAAATGTGAGTGGACCCAGCAACCTGCGGCACTCCTATCCCGAGTTTACTGAAGAGCCGGTCCCC
AACTCCATCGGCAGGTCCCCCAACAGCATCCTCATCACTGCCAGCGTCAAGGAAGCAGCCGAGGCTTTCCTAGGCTTCTC
GTACGCACCTCCCATGGACTCCTTCCTC

Alignment

ORF - retro_mmur_1287 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.17 %
• Parental protein coverage: 85.68 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSRANGNVHLGPSANPNARPTDFDFLKVIGKGNYGKVLLAKHKSDGTFYAVKVLQKKSILKKKEQGHIMA
          P........LG.S.NP.A.P.DF.FLKVIGKG..GKVLLA.HK....F.AVK.LQKK.ILKKKE..HIM.
Retrocopy PPSPSQQINLGLSSNPHANPSDFHFLKVIGKGSFGKVLLARHKAEEVFCAVKGLQKKAILKKKEEKHIMS

Parental  ERNVLLKNVRHPFLVGLRYSFQTPEKLYFVLDYVNGGELFFHLQRERRFLEPRARFYAAEVASAIGYLHS
          ERNVLL.NV.HPFLVGL..SFQT..KL.FVLD..NGGE.F.HLQRER.FLEPRA.FYAAE.ASA.GYLHS
Retrocopy ERNVLLENVKHPFLVGLHFSFQTADKLHFVLDSINGGEFFYHLQRERCFLEPRACFYAAEIASALGYLHS

Parental  LNIIYRDLKPENILLDCQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRAVDWWCLGA
          LNI.YRDLKPENILLD.QGH.VLTDFGLCKE..E...TTSTFCGTPEY.APEV..K.P.DR.VDWWCLGA
Retrocopy LNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYPAPEVPSKQPCDRTVDWWCLGA

Parental  VLYEMLHGLPPFYSQDVSQMYENILHQPLQIPGGRTVAACDLLQGLLHKDQRQRLGSKADFLEIKNHVFF
          VLYEML.GLPPFYS.....MY.NIL..P..........A...L.GLL.KD....L..K.DF.EIK.HVFF
Retrocopy VLYEMLYGLPPFYS*NTAEMYDNILNKPFLLKPNIMNSARHILEGLLQKDRAKWLRAKDDFMEIKSHVFF

Parental  SPINWDDLYHKRLTPPFNPNVAGPADLKNFDPEFTQEAVSKSIGCTPDTV---ASSSGTSSAFLGFSYAQ
          S.INWDDL..K..TPPFNPNV.GP..L....PEFT.E.V..SIG..P......AS......AFLGFSYA.
Retrocopy SLINWDDLINKKSTPPFNPNVSGPSNLRHSYPEFTEEPVPNSIGRSPNSILITASVKEAAEAFLGFSYAP

Parental  ENDGLL
          ..D..L
Retrocopy PMDSFL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1287 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1287 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007886	1 retrocopy	retro_mmur_401,
Microcebus murinus	ENSMICG00000015157	1 retrocopy	retro_mmur_1287 ,
Monodelphis domestica	ENSMODG00000001260	1 retrocopy	retro_mdom_1083,