RetrogeneDB ID: retro_mmur_1295

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_41079:4367..4822(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000017670
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: UBE2L6
• Ensembl ID: ENSMICG00000004882
• Aliases: None
• Description: ubiquitin-conjugating enzyme E2L 6 [Source:HGNC Symbol;Acc:12490]

Sequence

>retro_mmur_1295
ATGGCGGCCAGCAGGAGGCTGATGAAGGAGCTTGAAGAAATCCGCAAATGTGGAATGAAAAACTTCCGTAACATCCAGGT
TGATGAAGCTAATTTATTGACTTGGCAAGGGCTTATTGTTCCTGACAACCCTCCATATGATAAGGGGGCCTTCAGAATGG
AAATCAATTTTCCAGCAGAGCACCCATTCAAACCACCGAAGACCACGTTTAAAACAAATATCTATCACCCGAACATCGAT
GAAAAGGGGCAGGTAGGTCTGCCAGTAATTAGTGCTGAAAACTGGAAGCCAGCAACCAAAACCGACCAAGTAATCCAGTC
CCTCATAGCACTGGTGAACGACCCCCAGCCAGAGCACCCACTCCGGGCTGACCTAGCTGAAGAATACTCTAAGGACCGTA
AAAATTCTGTAAGAATGCTAAAGAGTTTACAAAGAAATATGGGGAAAAGCGACCT

Alignment

ORF - retro_mmur_1295 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.29 %
• Parental protein coverage: 99.35 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MTASKRVAKELEDLQKKPPQYLRNLFSDDANVLVWHALLLPDQPPYHLKAFNLRISFPEEYPFKPPKVNF
          M.AS.R..KELE...K......RN...D.AN.L.W..L..PD.PPY...AF...I.FP.E.PFKPPK..F
Retrocopy MAASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIVPDNPPYDKGAFRMEINFPAEHPFKPPKTTF

Parental  TTKIYHPNVDENGQVCLPIISNENWKPCTKTCQVLEALNMLVNKPNLGEPLRVELADPLTQN-PELFRRN
          .T.IYHPN.DE.GQV.LP.IS.ENWKP.TKT.QV...L..LVN.P....PLR..LA.......P..F..N
Retrocopy KTNIYHPNIDEKGQVGLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKD<P*KFCKN

Parental  AEEFTLRFGVDRP
          A.EFT...G..RP
Retrocopy AKEFTKKYGEKRP

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1295 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1295 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000014519	1 retrocopy	retro_amel_1385,
Choloepus hoffmanni	ENSCHOG00000001515	1 retrocopy	retro_chof_1084,
Microcebus murinus	ENSMICG00000004882	1 retrocopy	retro_mmur_1295 ,
Microcebus murinus	ENSMICG00000010253	1 retrocopy	retro_mmur_586,
Microcebus murinus	ENSMICG00000016799	3 retrocopies	retro_mmur_1075, retro_mmur_15, retro_mmur_419,
Mustela putorius furo	ENSMPUG00000000263	1 retrocopy	retro_mputfur_1092,