RetrogeneDB ID: retro_mmur_13

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_45690:4418..5678(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000008773
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000017172
• Aliases: None
• Description: None

Sequence

>retro_mmur_13
ACTCAGCTGTCAGATCATATGGTGAACAAGAAAACTCCTCATAGCATAAAACCATGTGGAAGCAGTGTGCGTGCAGACAT
ATCCATTGGTCATTCATTGCGTAATAGGCACGTCAAAGCTAATAATGGACCCAAACCACATAAGTATCAGGAACATGGTG
AGATGCTATATAAACACAAGCAACGTGGGAAAGCCTTCAGTTCACACCACCCCTTTCAAACACATGAAAGGCCTCCTACA
GAAAAGAAACCCTATGAATGTAAAGAATGTGGGAAAACCTTCGTTGCTCTCACAAGCATTCGAAAACACATGGTAATGCA
CAGTGGAGATGGCCGCTATAAATGTAAGTTTTGTGGGAAAGCCTTGGACTGTCTGAGTGTATGTATTATACATGAAAGAA
CTCACACTGGAGAGAAACCGTATGAATGTAAACAATGTGGTAAAGCCTTTAGTTTGTCCAGTTCAGTTCGAATACATGAA
AGAACTCACACTGGAGAAAAGCCTTATGAATGTAAAGAATGTGGGAGAGCATTCAAGTTTTCAAGTTCCTTTCGGAGACA
TGAAAGGACTCACACGGGAGAGAAGCCTTATGAATGCAAAGAATGTGGGAGAGCATTCAATCGTCCTAGTTCCTTTCGGA
GACATCAAAGGACCCACATTGGAGAGAAACCCTATGAATGTAAGCAATGTGGGAAAGCATTATCTTGTCTTATAAGCTTT
CAAAGACACATGAGTATGCACACTGGAGATAGACCTCATAAATGTAAGATATGTCGGAGAGCCTTTTATTCTCCCAGTTT
ATTTCAAAGACATGAAAGAACTCACACTGGAAAGAAACCCTATGAATGTAAGCAATGTGAAAAAGCATTCAGTTGTTCCA
CTTCCTTGCAGTATCATAAAAGGACTCACACTGGAGAGAAGCCCTATGAATGTAAACAATGTGGGAAAACCTTCAGATCT
GCCAGGTACATTCGAATACATGAAAGAATTCACACTGGAGAGAAGCCCTATGAATGTAAACAATGTGGGAAAGCCTTTCG
TTGTGTCAGTTCCTTTCGTAGACATGAACGAACTCATACTGGAGAAAAACCCTATCAATGTAAGCATTGTGCTAAAACCT
TCCCTTGTTCCATGTACACTCGAATACATGAAAGAATTCACACTGGAGAGAAACCTTATGCATGTAGGGAATGTGGGAAA
GCTTTCATTTGTTCTGCTTACTGTCGAAAGCATGAAAGAACTCATGATATTAATACATGA

Alignment

ORF - retro_mmur_13 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 65.96 %
• Parental protein coverage: 95.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QVGDDVVNKKTPPRVKLCESSMFGKVSIDHSF-NGLIRADTAHKPSMYKGCGQKPYTHKQREKAFSYPHS
          Q..D..VNKKTP...K.C.SS.....SI.HS..N....A....KP..Y...G...Y.HKQR.KAFS..H.
Retrocopy QLSDHMVNKKTPHSIKPCGSSVRADISIGHSLRNRHVKANNGPKPHKYQEHGEMLYKHKQRGKAFSSHHP

Parental  FGIYERSPAGKKPYECKECGKTFNSLTGFRNHMIMHSGDGPHKCMLCGRAFAFLSLYRKHERTHTGEKPY
          F...ER.P..KKPYECKECGKTF..LT..R.HM.MHSGDG..KC..CG.A...LS....HERTHTGEKPY
Retrocopy FQTHERPPTEKKPYECKECGKTFVALTSIRKHMVMHSGDGRYKCKFCGKALDCLSVCIIHERTHTGEKPY

Parental  KCKQCGKAFRTSGSVRVHEITHTGEKPYECKECGKAFIHFSSMLIHERTHTGEKPYECKICGKAFYSPKS
          .CKQCGKAF..S.SVR.HE.THTGEKPYECKECG.AF...SS...HERTHTGEKPYECK.CG.AF..P.S
Retrocopy ECKQCGKAFSLSSSVRIHERTHTGEKPYECKECGRAFKFSSSFRRHERTHTGEKPYECKECGRAFNRPSS

Parental  FQTHERSHNGKKPYECKQCGKALYHPISFQRMFNYMRTHTGEKPYECKECGKAFNFPSSLHIHERHERTH
          F..H.R.H.G.KPYECKQCGKAL...ISFQR....M..HTG..P..CK.C..AF..PS......RHERTH
Retrocopy FRRHQRTHIGEKPYECKQCGKALSCLISFQR---HMSMHTGDRPHKCKICRRAFYSPS---LFQRHERTH

Parental  TGEKPYECKQCGKAFSCSTSFKYHERTHTGEKPYECKHCGKAFRSSKWIRIHERTHTGEKPYECKQCGKA
          TG.KPYECKQC.KAFSCSTS..YH.RTHTGEKPYECK.CGK.FRS...IRIHER.HTGEKPYECKQCGKA
Retrocopy TGKKPYECKQCEKAFSCSTSLQYHKRTHTGEKPYECKQCGKTFRSARYIRIHERIHTGEKPYECKQCGKA

Parental  FRSSTSFRNHERTHTGEKPYKCKHCDKAFMSAKCVRIHERIHTGEKPYECQTCGKAFIRSSVCRRHEKTH
          FR...SFR.HERTHTGEKPY.CKHC.K.F......RIHERIHTGEKPY.C..CGKAFI.S..CR.HE.TH
Retrocopy FRCVSSFRRHERTHTGEKPYQCKHCAKTFPCSMYTRIHERIHTGEKPYACRECGKAFICSAYCRKHERTH

Parental  AVN
          ..N
Retrocopy DIN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_13 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_13 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000017172	1 retrocopy	retro_mmur_13 ,