RetrogeneDB ID: retro_mmur_1344

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_4657:96442..97305(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TRDMT1
• Ensembl ID: ENSMICG00000011567
• Aliases: None
• Description: tRNA aspartic acid methyltransferase 1 [Source:HGNC Symbol;Acc:2977]

Sequence

>retro_mmur_1344
GTGCCTGCGGGGGGGGGGGCTGCCATTGATGTAAACACTGCTGCTAATGAGCGTACAAGTGTAATTTGCCTCAGACACGT
TTGCTGGCCAAGAGAGGTGAAGGCATTACCCTAGAAGAGTTTGACAGATTATCTTGCAATACGATTTTAATGAGCCCTCC
ATGTCAGCTGTTCACAAGACTTGGCCCGCAGGGTGATGTGATCCATCCAAGGACGAACAGCTTCTTACATATTCTAGATA
TTCTCCCAGGATTACAGAAATTACTGAAGTATATTCCTTTAGAAAATGTTAAAGGTTTTGAAGTATCTTCTACAAGAGAC
CTGTTGATACAAACAATGGAAAATTTCGGCTTACAGCACCAAGAGCTTCTATTATTTCCAACCTCTCTCGGCATTCCAAA
TTCAAGGAAATGGCATTTCCTTATTGCAAAGCTTCTGTCAGAACCATTACCTTTTCAAGTCCCTGGCCAGGTACCCATGG
AGTTCCCCAACATTGAATATGAACACCCACAAAAAAGGCAACAGATGCAGAAAATAAAATTGAAGAAAAATTAAACCAAA
TATTTGCTTTTATAGGAGAACATCATGTTCTGGAAAAGATGCCATTCTTTTTAAGCTTGAAACTGCAGAAGAAATTGAAA
GGAAAAATCAACAAGACAGTGATCTCTCTGTGCCAATGCTAAAAGATTTTCTTGAAGATGACGCTGACATGCATCAGCAC
TTTTTACCTCCAAGTCATTGCTGTGACACGCTCTTCTATAAGACTCTGTTAAGCCCACTTGCAGAAGGTCCGTGTGCTTT
ACCAAAGGTGTGGGAGCCACGAGAAGGGCAGGACCTGTGTTGCAGACTCCAGAAGATGTGCAG

Alignment

ORF - retro_mmur_1344 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.19 %
• Parental protein coverage: 78.8 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 4

Retrocopy - Parental Gene Alignment:

Parental  VPAQVVAAIDVNTVANE-VYKYNFPQTQLLAKTIEGITLEEFDRLSFNMILMSPPCQPFTRIGLQGDMTD
          VP.....AIDVNT.ANE..YK.N.PQT.LLAK..EGITLEEFDRLS.N.ILMSPPCQ.FTR.G.QGD...
Retrocopy VPXXXXXAIDVNTAANE<AYKCNLPQTRLLAKRGEGITLEEFDRLSCNTILMSPPCQLFTRLGPQGDVIH

Parental  PRTNSFLYILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSXXXPNSRLRY
          PRTNSFL.ILDILP.LQKL.KYI.LENVKGFEVSSTRDLLIQT.EN.G.Q.QE.LL.PTS...PNSR...
Retrocopy PRTNSFLHILDILPGLQKLLKYIPLENVKGFEVSSTRDLLIQTMENFGLQHQELLLFPTSLGIPNSRKWH

Parental  FLIAKLQSEPLPFQVPGQVLTKFPKIEYEHPQ-KYAVDAEDKIEE-KIEPNICFDSSTQCSGKDAILFKL
          FLIAKL.SEPLPFQVPGQV...FP.IEYEHPQ.K.A.DAE.KIEE.KI.PNICF...T.CSGKDAILFKL
Retrocopy FLIAKLLSEPLPFQVPGQVPMEFPNIEYEHPQ<KKATDAENKIEE<KIKPNICFYRRTSCSGKDAILFKL

Parental  ETAEEIERKNQQDSDLSVQMLKDFLEDDIDMNQYFLPP-KSLLRYALLLDIVKPTCRRSVCFTKGYGSYI
          ETAEEIERKNQQDSDLSV.MLKDFLEDD.DM.Q.FLPP.KSLL..ALL.D.VKPTCRRSVCFTKG.G...
Retrocopy ETAEEIERKNQQDSDLSVPMLKDFLEDDADMHQHFLPP<KSLL*HALL*DSVKPTCRRSVCFTKGVGA-T

Parental  EGTGSVLQTAEDVQ
          ...G.VLQT.EDVQ
Retrocopy RRAGPVLQTPEDVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1344 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1344 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000011567	1 retrocopy	retro_mmur_1344 ,