RetrogeneDB ID: retro_mmur_1347

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_46964:3753..4728(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KPNA6
• Ensembl ID: ENSMICG00000001434
• Aliases: None
• Description: karyopherin alpha 6 (importin alpha 7) [Source:HGNC Symbol;Acc:6399]

Sequence

>retro_mmur_1347
GCTGGAGACAGCTCCGTTTGCTGAGATTACATCTTGAACTGTTGTTCTATCCTTAATCCTTTGTTAATACTCTTTACCAA
GTCCACATGACTGACAATGACACGGAATGCGGTCTGGGCCCTGTCAAACCTCTACCAAGGGAAGAACCCACCCCCAGAAT
TTGCAAAAGCCTCTTGTTTGCTGGTATTGTCTCAGCTACTCTTCAGCAGCAACTCAGACTTGTTGGAAGATGCTTGCTGG
GAACCTCTCTTATCTGTCTGATGGCCCCAATAAGAAAATCCAGGTGGTCATAGACTCCGGAGTCTGCCAGAGATTGGTAG
ACCTGCTGATGCACAACAATTATAAAGTGACCTCCCCTGCCCTGAGAGCTGTGGGTAACATCATCACCAGGGATGATGAC
ATCCAGACCCAGGTCATTCTGAACTGTTCAGCCCTCTCTTGCCTCCTCCACTTGTTGAGCAGCCCCAAGGAGTCAATCCA
GAAGGAAACTTGCTGAACCATTTCATATATCACCATTGTTGGCAACAGGGCTCAAATACAAGCTGTTATAGATGCAAATG
TCTTCCCTGTGTTGATTGAAATCCTTCAGAAAGCATAGTTCTGTACAAGGAAAGAGGTAGCCTGGGCCATCAATGCCACA
TCAGGAGGAATCCCTATGCAGATTAGGTATGCGGACTCACTGGGCTGCATCAAATCCCTATGTGATTTGCTGACTGTAAT
GGATTCAAAGATTGTGCAAGTGGACCTCAGTTGACTGGAGAACATCCTGTGGCTTGGAGAGCAAGAAGGCCAACACAGTG
GCTCAGGGAATAACCCCTACTGTGGCCTCATCGAGGAAGCCTATGGCTTGGATAAAACTGAGTTTCTCCAGAGCCATGAG
AACCAGGAGATCTACCAGAGGGCATTTGATCTGATGGAGCACTACTTTGGTGTAAGAGATAATGATAGCAGCCTGGCTCC
CAAATTGATGAAACT

Alignment

ORF - retro_mmur_1347 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 82.98 %
• Parental protein coverage: 60.11 %
• Number of stop codons detected: 5
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  AGDSSVCRDYVLNC-SILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFS
          AGDSSVC.DY.LNC.SILNPLL.L.TKST.LTMTRNAVWALSNL..GKNPPPEFAK.S.CL.VLS.LLFS
Retrocopy AGDSSVC*DYILNCCSILNPLLILFTKST*LTMTRNAVWALSNLYQGKNPPPEFAKAS-CLLVLSQLLFS

Parental  SDSDLLADACWA-LSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVT-GDDIQTQV
          S.SDLL.DACW..LSYLSDGPN.KIQ.VIDSGVC.RLV.LLMHN.YKV.SPALRAVGNI.T..DDIQTQV
Retrocopy SNSDLLEDACWE>LSYLSDGPNKKIQVVIDSGVCQRLVDLLMHNNYKVTSPALRAVGNIITRDDDIQTQV

Parental  ILNCSALPCLLHLLSSPKESIRKEACWTISNIT-AGNRAQIQAVIDANIFPVLIEILQKAEFRTRKEAAW
          ILNCSAL.CLLHLLSSPKESI.KE.C.TIS.IT..GNRAQIQAVIDAN.FPVLIEILQKA.F.TRKE.AW
Retrocopy ILNCSALSCLLHLLSSPKESIQKETC*TISYITIVGNRAQIQAVIDANVFPVLIEILQKA*FCTRKEVAW

Parental  AITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEGKRSGSGVNPYCGLI
          AI.NATSGG.P.QIRY..SLGCIK.LCDLLTVMDSKIVQV.L..LENIL.LGEQEG..SGSG.NPYCGLI
Retrocopy AI-NATSGGIPMQIRYADSLGCIKSLCDLLTVMDSKIVQVDLS*LENILWLGEQEGQHSGSGNNPYCGLI

Parental  EEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGVEDDDSSLAP-QVDET
          EEAYGLDK.EFLQSHENQEIYQ.AFDL.EHYFGV.D.DSSLAP.Q.DET
Retrocopy EEAYGLDKTEFLQSHENQEIYQRAFDLMEHYFGVRDNDSSLAP<QIDET

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1347 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1347 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001434	1 retrocopy	retro_mmur_1347 ,
Macaca mulatta	ENSMMUG00000008455	1 retrocopy	retro_mmul_463,
Sorex araneus	ENSSARG00000008510	1 retrocopy	retro_sara_521,