RetrogeneDB ID: | retro_mmur_1349 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_47249:4065..4808(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | HTR3C | ||
| Ensembl ID: | ENSMICG00000011090 | ||
| Aliases: | None | ||
| Description: | 5-hydroxytryptamine (serotonin) receptor 3C, ionotropic [Source:HGNC Symbol;Acc:24003] |
Retrocopy-Parental alignment summary:
>retro_mmur_1349
GATCTGTGGCTTCCAGATATGTTCATCCAGGAGTTCATGAATGTGGATCCGACACCTGCTGGTCTCATGGCTTACGTCAA
CAGTGAAGGTCACACCAAATATAATAAGCCAATGCAGGTGGACACCAACTGTAATCTGGACATCTTCTATTTCCCCTTTG
ATGAACAGAACTGCACGCTTTCCTTTAGCTCATTTGCCTACACAGTGGAGAACATGCTCCTGAGCACGGAGACGGAAGTG
CAAGAGCTCTCGAACACATCGAGGAACCTCATTCAGTGCAAGGTGGAGTGGGTACTTCTGGGTATCACCCAAAGAGCAAT
AAGGATACCCGTGTCCCCCAGCCAGTATGACCAAATCATTTTCTACGTGGCCATCAGGCGCAGGCCCAGACTCTACATCG
TAAACCTCCTGGTGCCCAGTGGCTTTCTGGTTGCCATCGACGCCCTCAGCTTCTACCTGCCAGCAGAGAGCCAGAATCGC
ACCCCATCCAAGATGACCCTTCAGCTGGGCTACAATGTCTTCCTGCTTATGGTGAATGACTTACTCCCCACCAGTGGCAC
CCCCCTCATCAGTGTCTACTTTGCCCTGTGCCTGTCGCTGATGGTGCTCAGCTTGTTGGAGACCGTCTTCATCACCTACC
TGCTGCTCCTGGCCACTGCCCAGCCCCACCCATGCCGAGGTGGCTCCACTCCCTGCTGCTGCACTGCACCTGCCCAAGGA
AATGCTGCCCCACTGCGCCCCAC
ORF - retro_mmur_1349 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 73.09 % |
| Parental protein coverage: | 55.48 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | NLWLPDIFIMESMDEDETPSGLTAYVSSEGRIKYDKPMRVTSICNLDIFYFPFDQQNCTFTFTSFLYTVD |
| .LWLPD.FI.E.M..D.TP.GL.AYV.SEG..KY.KPM.V...CNLDIFYFPFD.QNCT..F.SF.YTV. | |
| Retrocopy | DLWLPDMFIQEFMNVDPTPAGLMAYVNSEGHTKYNKPMQVDTNCNLDIFYFPFDEQNCTLSFSSFAYTVE |
| Parental | SMLLGMDKEVWEITDTSRNVIRTQGEWELLGINKASPKMLVGDNLYDQIMFYXAIRRRPSLYIVNLLVPS |
| .MLL....EV.E...TSRN.I....EW.LLGI........V....YDQI.FY.AIRRRP.LYIVNLLVPS | |
| Retrocopy | NMLLSTETEVQELSNTSRNLIQCKVEWVLLGITQRAIRIPVSPSQYDQIIFYVAIRRRPRLYIVNLLVPS |
| Parental | GFLVAIDALSFYLPAESEIRAPFKITLLLGYNVFLLMMNDLLPSSGTPLISVYFALCLSLMVLSLLETVF |
| GFLVAIDALSFYLPAES..R.P.K.TL.LGYNVFLLM.NDLLP.SGTPLISVYFALCLSLMVLSLLETVF | |
| Retrocopy | GFLVAIDALSFYLPAESQNRTPSKMTLQLGYNVFLLMVNDLLPTSGTPLISVYFALCLSLMVLSLLETVF |
| Parental | ITYLLHLATTQP-PPMPEWLHSLLLHCTGPRKCCPTASH |
| ITYLL.LAT.QP.PPMP.WLHSLLLHCT.PRKCCPTA.H | |
| Retrocopy | ITYLLLLATAQP<PPMPRWLHSLLLHCTCPRKCCPTAPH |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1349 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1349 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000011090 | 1 retrocopy |
retro_mmur_1349 ,
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