RetrogeneDB ID: retro_mmur_1367

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_4989:23307..23703(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MED19
• Ensembl ID: ENSMICG00000004907
• Aliases: None
• Description: mediator complex subunit 19 [Source:HGNC Symbol;Acc:29600]

Sequence

>retro_mmur_1367
CTGATCACACACTACAACCTGGAACATGCCTATAATAAATTCTGTGGGAAAAAGGTGAAGGAGAAACTAAGTAACTTCCT
GCCTGACCTGCCAGGGATGATTGATCTGGCTGGTTCCCATGATAACAGCAGCCTCCGCTCCCTCATTGAGAAGCCCCCTA
TTCTTGGTGGCTCTTTCAATCCTATCACAGGGACCATGCTGGCTGGCTTCCACCTCCACACTGGACTGTTGCCCGAGCAG
TGTCGTCTGATGCATATTCAGCTTCCCAAGAAGAAGAATAAGCACAAGCACAAACAGAGCCGTACTCAGGATCCCGGCCC
CCCAGGAACCCCATCTGATTCGGATCACAAGAAGAAGAAAAAGAAGAAAGAAGAGGATCCTGAACGGAAAAGGAAG

Alignment

ORF - retro_mmur_1367 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.64 %
• Parental protein coverage: 77.19 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLPGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF
          LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDL.GSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF
Retrocopy LITHYNLEHAYNKFCGKKVKEKLSNFLPDLPGMIDLAGSHDNSSLRSLIEKPPILGGSFNPITGTMLAGF

Parental  RLHTGPLPEQCRLMHIQPPKKKNKHKHKQSRTQDPVPPETPSDSDHKKKKKKKEEDPERKRK
          .LHTG.LPEQCRLMHIQ.PKKKNKHKHKQSRTQDP.PP.TPSDSDH.........DPERKRK
Retrocopy HLHTGLLPEQCRLMHIQLPKKKNKHKHKQSRTQDPGPPGTPSDSDHXXXXXXXXXDPERKRK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1367 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1367 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000004907	1 retrocopy	retro_mmur_1367 ,
Monodelphis domestica	ENSMODG00000020110	2 retrocopies	retro_mdom_1684, retro_mdom_27,