RetrogeneDB ID: retro_mmur_1371

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_50439:4095..4474(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000014057
• Aliases: None
• Description: None

Sequence

>retro_mmur_1371
GAGGAGGAACAAGGGATTCAGTCTTTCTCCAGGGAAACCCAGTCCCTCAGAGGTGGCTAGAATGGGTGGGATGGGACCCA
GGTGAGGGGGTGGAAGGAGTCGTTAAATAAAGGAGAGGGCTGGAGAGGGGAATCAGGACTGTGCTCTAGCGCACCATGTT
TTCCTTGTGCTTATTGAGCCCAACTCAGCAGAAAGAGAAGCCTCCAAGGAGGAGGTAAAGGCTGGCAGTGATGAAACAGT
TGTAGCTGACTTGCTCATAAAGGCTGTATATATTCTGGGGGCCATCCTCAAAATCTTTCTGCATGAAAGGAACATCCTCA
ATTAACACGGCGGAATGGACATTAAAAAATATTCTGAGCATTATCTGAAAACTGGGAAC

Alignment

ORF - retro_mmur_1371 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 73.23 %
• Parental protein coverage: 73.37 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EGEQGIQFLARETQSLRGG-DGWDATQVRGCKESLNRG-RSGEGKRDHALAHHVFLALIEPNLAEREASK
          E.EQGIQ...RETQSLRGG..GWD.TQVRG.KESLN.G.R.GEG..D.ALAHHVFL.LIEPN.AEREASK
Retrocopy EEEQGIQSFSRETQSLRGG*NGWDGTQVRGWKESLNKG>RAGEGNQDCALAHHVFLVLIEPNSAEREASK

Parental  EEVKSGGDETVVADLLVKVVYVLGAIPGAVLQRGNILY-HSGMDVEKYSEHYLKNGN
          EEVK.G.DETVVADLL.K.VY.LGAI....L...NIL..H.GMD..KYSEHYLK.GN
Retrocopy EEVKAGSDETVVADLLIKAVYILGAILKIFLHERNILN*HGGMDIKKYSEHYLKTGN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1371 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1371 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000015517	1 retrocopy	retro_dnov_1549,
Microcebus murinus	ENSMICG00000014057	1 retrocopy	retro_mmur_1371 ,
Tarsius syrichta	ENSTSYG00000006901	2 retrocopies	retro_tsyr_1105, retro_tsyr_1738,