RetrogeneDB ID: retro_mmur_1373

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_5082:39315..39758(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MLX
• Ensembl ID: ENSMICG00000010258
• Aliases: None
• Description: MLX, MAX dimerization protein [Source:HGNC Symbol;Acc:11645]

Sequence

>retro_mmur_1373
AAGGCGGGGTGCGTCTACAAGGACAACAGCCTGGATCCCTGGCTTTTTGTAGGAAGCACATGCAAGGGGAGTGTAGTGTT
TGGAGCTAATAGCATCGGTTCCACCAGTGGTGCCTCTTCTGTCCCCAGCACAGACGATGAGGACAGCGATCACAACCAGG
AGTCCCACAAGGACTGGCGGTGGCAAGCACATGCTCACACACTAACAGAAAAGGAGGGACTCCATCAAGGAAGGCCGTGA
CGACCTTCAGACCATGTCCCCACCTGGCCAGCAGCAGGACTTCTCCACGGGCTCCCAAAAAGCTCAGCAAAGCCATTGTC
CTACACAAGACCATCGATGTCATCCAGCTTTTGCACGAGGGAAAGAAAAGGCAGGAGGAGGAGGTGTCCACGCTATGCCA
GGATGTCACAGCCCTAAACATCATGAAGGTGAACTATGAGCAG

Alignment

ORF - retro_mmur_1373 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 69.28 %
• Parental protein coverage: 50.34 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  KVEYAYSDNSLDPGLFVESTRKGSVVSRANSIGSTS-ASSVPNTDDEDSDYHQESYKESYKDRRRRAHTQ
          K....Y.DNSLDP.LFV.ST.KGSVV..ANSIGSTS.ASSVP.TDDEDSD..Q....ES.KD.R..AH..
Retrocopy KAGCVYKDNSLDPWLFVGSTCKGSVVFGANSIGSTSGASSVPSTDDEDSDHNQ----ESHKDWRWQAHAH

Parental  AE-QKRRDAIKRGYDDLQIV-PTCQQQDFSIGSQ-KLSKAIVLQKTIDYIQFLHKEKKKQEEEVTTLRKD
          ...QKRRD.IK.G.DDLQ...P..QQQDFS.GSQ.KLSKAIVL.KTID.IQ.LH..KK.QEEEV.TL..D
Retrocopy TL>QKRRDSIKEGRDDLQTMSPPGQQQDFSTGSQ>KLSKAIVLHKTIDVIQLLHEGKKRQEEEVSTLCQD

Parental  VTALKIMKVNYEQ
          VTAL.IMKVNYEQ
Retrocopy VTALNIMKVNYEQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1373 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1373 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000005011	1 retrocopy	retro_cjac_2774,
Homo sapiens	ENSG00000108788	1 retrocopy	retro_hsap_2216,
Gorilla gorilla	ENSGGOG00000010869	1 retrocopy	retro_ggor_1748,
Microcebus murinus	ENSMICG00000010258	1 retrocopy	retro_mmur_1373 ,
Monodelphis domestica	ENSMODG00000014918	2 retrocopies	retro_mdom_501, retro_mdom_539,
Nomascus leucogenys	ENSNLEG00000011638	1 retrocopy	retro_nleu_2338,
Pongo abelii	ENSPPYG00000008387	1 retrocopy	retro_pabe_2087,
Pan troglodytes	ENSPTRG00000009208	1 retrocopy	retro_ptro_1681,