RetrogeneDB ID: retro_mmur_1392

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_52920:2..1062(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000016222
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: CNOT6
• Ensembl ID: ENSMICG00000013018
• Aliases: None
• Description: CCR4-NOT transcription complex, subunit 6 [Source:HGNC Symbol;Acc:14099]

Sequence

>retro_mmur_1392
GAACAACCACCTCCAAGATCTTGGATTATGTTACAAGAACCAGACAGAACAAGGCCAACTGCCTTGTTTTCTGTCATGTG
CTATAATGTTCTTTGTGATAAATATGTGACCCGGCAGTTATATGGCTACTGTCCATCATGGGCACTAAATTGGGACTACA
GGAAAAAGGCCATTATTCAAGAAATCTTAAGCTGCAATGCTGATATCATAAGTCTTCAGGAGGTTGAAACGGAACAGTAT
TACAGTTTTTTTTCTGGTAGAACTGAAAGAACGTGGCTATAATGGATTCTTTAGTCCTAAGTCTAGAGCTAGGACAATGT
CAGAACAAGAAAGAAAACATGTTGATGGCTGTGCAGTATTCTTCAAGACAGAAAATTTTACTTTGGTTCAGAAACACACT
GTTGAATTTAATCAGCTAGCAATGGCAAATTCAGAAGGGTCTGAAGCTATGCTGAACAGAGTCATGACAAAAGATAACAT
TGGAGTTGCAGTACTGCTAGAACTTCGAAAGGAATTGATTGAAATGTCATCTGGAAAGCCACATCTTGTAACAGAAAAAC
AGCTTATTCTTGTGGCGAATGCTCACATGCATTGGGACCCTGAATACTCTGATGTGAAGTTGGTGCAAACTATGATGTTC
CTCTCAGAAGTGAAGAACATTATTGATAAAGCCTCTCGAAACCTCAAATCCAGTGTATTGGGAGAATTTGGAATTATTCC
ACTTGTGTTATGTGCAGATCTTAATTCTTTGCCAGACTCTGGTGTTGTAGAATATTTGAGCACTGGTGGAGTAGAAACAA
ATCATAAAGACTTTAAGGAACTGAGATATAATGAAAGTCTTACAAATTTCAGCTGCAATGGGAAGAATGGAACAACCAAT
GGAAGGATCACTCATGGTTTCAAGTTAAAGAGTGCCTATGATAGTGGCCTGATGCCTTACACAAATTACACATTTGATTT
CAAGGGTATTATTGACTACATCTTCTATTCCAAAATTCAGCTGAACACGTTAGGCATCCTGGGACCTCTGGACCACCACT
GGCTGGTTGAGAATAACATC

Alignment

ORF - retro_mmur_1392 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.61 %
• Parental protein coverage: 90.49 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  EQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKAIIQEILSCNADII
          EQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKY.TRQLYGYCPSWALNWDYRKKAIIQEILSCNADII
Retrocopy EQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKYVTRQLYGYCPSWALNWDYRKKAIIQEILSCNADII

Parental  SLQEVETEQYYSFF-LVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQL
          SLQEVETEQYY....LVELKERGYNGFFSPKSRARTMSEQERKHVDGCA.FFKTE.FTLVQKHTVEFNQL
Retrocopy SLQEVETEQYYXXX>LVELKERGYNGFFSPKSRARTMSEQERKHVDGCAVFFKTENFTLVQKHTVEFNQL

Parental  AMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLITEKQLILVANAHMHWDPEYSDVKLVQ
          AMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHL.TEKQLILVANAHMHWDPEYSDVKLVQ
Retrocopy AMANSEGSEAMLNRVMTKDNIGVAVLLELRKELIEMSSGKPHLVTEKQLILVANAHMHWDPEYSDVKLVQ

Parental  TMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNES
          TMMFLSEVKNIIDKASRNLKSSVLGEFG.IPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNES
Retrocopy TMMFLSEVKNIIDKASRNLKSSVLGEFGIIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNES

Parental  LTNFSCNGKNGTTNGRITHGFKLKSAYDSGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGIL-TLDHHWLV
          LTNFSCNGKNGTTNGRITHGFKLKSAYDSGLMPYTNYTFDFKGIIDYIFYSK.QLNTLGIL..LDHHWLV
Retrocopy LTNFSCNGKNGTTNGRITHGFKLKSAYDSGLMPYTNYTFDFKGIIDYIFYSKIQLNTLGILGPLDHHWLV

Parental  ENNI
          ENNI
Retrocopy ENNI

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1392 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1392 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Equus caballus	ENSECAG00000019325	1 retrocopy	retro_ecab_962,
Microcebus murinus	ENSMICG00000013018	1 retrocopy	retro_mmur_1392 ,
Oryctolagus cuniculus	ENSOCUG00000011083	1 retrocopy	retro_ocun_1589,