RetrogeneDB ID: retro_mmur_1397

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_53561:3366..4953(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: DUSP16
• Ensembl ID: ENSMICG00000004421
• Aliases: None
• Description: dual specificity phosphatase 16 [Source:HGNC Symbol;Acc:17909]

Sequence

>retro_mmur_1397
GACTGTTTTCTCACTGTACTTCTGAGTAAACTGGAGAAGAGCTTCAACTCTCTTCACCTGCTTGTAGGTGGGTTTGCTGA
GTTCTCTCGTTGTTTCCCTGGCCTCTGTGAAGGAAAATCCACTATAGTCCCTACCTGCATTTCTCAGCCTTGCTTATCTG
TTGCCAACATTGGGCCAACCCGAATTCTTCCCAATCTTTATCTTGGCTGCCAGCGAGATGTCCTCAACAAGGAGCTGATG
CAGCAGAATGGGATTGGTTACGTGTTAAATGCCAGCAATACCTGTCCAAAGCCAGACTTTATCCCTGAGTCTCATTTCCT
GCGAGTGCCTGTGAATGATAGCTTTTGTGAGAAAATTTTGCCATGGTTGGACAAATCAGTAGATTTCATTGAGAAAGCAA
AAGCCTCCAACGGGTGTGTCCTAGTGCACTGTTTGGCCAGGATCTCTCACTCTGCCACCATCGCCATTGCCTACATCATG
AAGAGGATGGACCTGTCTTTAGATGAAGCTTACAGATTTGTGAAAGAAAAAAGACCTACTATATCTCCAAACTTCAATTT
TCTGGGCCAACTCCTGGACTATGAGAAGAAGATTAAGAACCAGACTGGAGCATCAGGGCCAAAGAGCAAACTCAAGCTGC
TGCACCTGGAGAAGACAAATGAACCCGTCCCTGCGGTCTCAGAGGGTGGACAGAAAAGTGAGATGTCCCTCGGTCCACCC
TGTGCCGACTCTGCTACCTCAGAGGCAGCGGGGTAGAGGCCTGTGCATGCTGCCAGTGTGCCCAGCGTACAGCCGTCACT
GTTAGGGGACAGTCCACTGGTACAGGCGCTAAACGGGATCCACCTGTCCTCAGATAAGCTGGAAGACAGCAGTAAGCTCA
AGCGTTCCTTCTCTCTCAATATCAAATCAGTGTCGTATTCAGCCAGCGTGGCAGCATCCTTACACGGTTTCTCCTCATCA
GAAGATGCTTTGGAATACTATAAATCCTCCACTGCTCTGGATGGGTCCAACAAGCTATGCCAGTTCTCCCCGGTTCAGGA
AGTGTCAGAGCAGAGTCCTGAAACCAGCCCCGATAAGGAGGAAGCCAACATCCCCAAGACACCCCAGGCCGCCAGGCCTT
CAGAGATCCAGAGCAAGCGATTGCACTCAGTAAGAACCAGCAACAGTGGTGCCACCCAGAGGTCCTTCTTGTCTCCGTTA
CACTGAAGTGAGAGCGTGGAGGACAATCACCACACCAACTTCCTTTTTGGCCTTTCCACCAGCCAGCAACACCTCACCAA
GTCTACTGCCGGCCTGGGCCTCAAGGGCTGGCATTCGGATATCTGGGCTCCCCAGACCTCGACCCCTTCCCTGACCAACA
GTTGGTATTTTGCTACAGAGCCCGCTCACTTCTACTCTGCCTCGGCCATCTATGGAGGCAATGCCAGCTATTCTGCCTAT
AGCTGTAGCCAGCTGCCCACCTGCAGTGACCCAGTCTATTCTGTGCGCAGGCAGCAGAAGCCAAGTGACAGAGCTGACTC
TCGGCGGAGCTGGCATGAAGAGAGCCCTTTTGAAAAGCAGTTTAAATGCAGAAGTTGCCAGATGGAA

Alignment

ORF - retro_mmur_1397 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.98 %
• Parental protein coverage: 79.88 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DCFLTVLLGKLEKSFNSVHLLVGGFAEFSRCFPGLCEGKSTLVPTCISQPCLPVANIGPTRILPNLYLGC
          DCFLTVLL.KLEKSFNS.HLLVGGFAEFSRCFPGLCEGKST.VPTCISQPCL.VANIGPTRILPNLYLGC
Retrocopy DCFLTVLLSKLEKSFNSLHLLVGGFAEFSRCFPGLCEGKSTIVPTCISQPCLSVANIGPTRILPNLYLGC

Parental  QRDVLNKELMQQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCV
          QRDVLNKELMQQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCV
Retrocopy QRDVLNKELMQQNGIGYVLNASNTCPKPDFIPESHFLRVPVNDSFCEKILPWLDKSVDFIEKAKASNGCV

Parental  LVHCLAGISRSATIAIAYIMKRMDLSLDEAYRFVKEKRPTISPNFNFLGQLLDYEKKIKNQTGASGPKSK
          LVHCLA.IS.SATIAIAYIMKRMDLSLDEAYRFVKEKRPTISPNFNFLGQLLDYEKKIKNQTGASGPKSK
Retrocopy LVHCLARISHSATIAIAYIMKRMDLSLDEAYRFVKEKRPTISPNFNFLGQLLDYEKKIKNQTGASGPKSK

Parental  LKLLHLEKPNEPVPAVSEGGQKSEMSLGPPCADSATSEAAGQRPVHAASVPSVQPSLLGDSPLVQALNGI
          LKLLHLEK.NEPVPAVSEGGQKSEMSLGPPCADSATSEAAG.RPVHAASVPSVQPSLLGDSPLVQALNGI
Retrocopy LKLLHLEKTNEPVPAVSEGGQKSEMSLGPPCADSATSEAAG*RPVHAASVPSVQPSLLGDSPLVQALNGI

Parental  HLSSDKLEDSSKLKRSFSLDIKSVSYSASV-ASLHGFSSSEDALEYYKSSTALDGSNKLCQFSPVQEVSE
          HLSSDKLEDSSKLKRSFSL.IKSVSYSASV.ASLHGFSSSEDALEYYKSSTALDGSNKLCQFSPVQEVSE
Retrocopy HLSSDKLEDSSKLKRSFSLNIKSVSYSASVAASLHGFSSSEDALEYYKSSTALDGSNKLCQFSPVQEVSE

Parental  QSPETSPDKEEANIPKTPQAARPSESQSKRLHSVRTSNSGATQRSFLSPLHRSGSVEDNHHTNFLFGLST
          QSPETSPDKEEANIPKTPQAARPSE.QSKRLHSVRTSNSGATQRSFLSPLH.S.SVEDNHHTNFLFGLST
Retrocopy QSPETSPDKEEANIPKTPQAARPSEIQSKRLHSVRTSNSGATQRSFLSPLH*SESVEDNHHTNFLFGLST

Parental  SQQHLTKSTAGLGLKGWHSDIWAPQTSTPSLTNSWYFAAEPAHFYSASAIYGGNASYSAYSCSQLPTCSD
          SQQHLTKSTAGLGLKGWHSDIWAPQTSTPSLTNSWYFA.EPAHFYSASAIYGGNASYSAYSCSQLPTCSD
Retrocopy SQQHLTKSTAGLGLKGWHSDIWAPQTSTPSLTNSWYFATEPAHFYSASAIYGGNASYSAYSCSQLPTCSD

Parental  PVYSVRRRQKPSDRADSRRSWHEESPFEKQFKRRSCQME
          PVYSVRR.QKPSDRADSRRSWHEESPFEKQFK.RSCQME
Retrocopy PVYSVRRQQKPSDRADSRRSWHEESPFEKQFKCRSCQME

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1397 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1397 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000004421	1 retrocopy	retro_mmur_1397 ,