RetrogeneDB ID: | retro_mmur_141 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_1437:202303..202702(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CIDEC | ||
| Ensembl ID: | ENSMICG00000002317 | ||
| Aliases: | None | ||
| Description: | cell death-inducing DFFA-like effector c [Source:HGNC Symbol;Acc:24229] |
Retrocopy-Parental alignment summary:
>retro_mmur_141
CCGCGGGGCAGGCCGGGCAGGACTCCCCGAGTGTGGCAGGGCATCGTGGCCAGGGTCTTGAGGACCTTCTCCGCAAGGTG
TGAGACTCTTTGAAGCTCGCAGACCGGCCCTTCTCGCCTGTGCTGGAGGAAGATGGCACAACTGTTGAGACTGAGGAGTA
TTTCTGAGGCCCTGACAGGGGGCACAGTGTTCATGATGCTCAGGAAGCTGTGGTCCCCCATCAGAGCAAGGGGCTGGTAC
CAACTTTCCCTCTCCCATAAACATGCCAAGAAGATCAGGGAGGCCTCCGGAACTTTCTACCTGTACCAGGTGAACCTGCA
GGACTGGATTTGTTACCTGAATGTGAAGGCAACTCTCCACCATGAAGGCTCCCTTTCCTGCGGTCTGCACTGCTGTGGG
ORF - retro_mmur_141 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 59.15 % |
| Parental protein coverage: | 58.58 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | PRARPYRVSTADRRVRKGVLAH-GLEDLLYKVRDILMLADKPFILVLEEDGTTVETEDYF-QALAGNTVF |
| PR.RP.R......RV..G..A..GLEDLL.KV.D.L.LAD.PF..VLEEDGTTVETE.YF..AL.G.TVF | |
| Retrocopy | PRGRPGRTP----RVWQGIVAR<GLEDLLRKV*DSLKLADRPFSPVLEEDGTTVETEEYF>EALTGGTVF |
| Parental | MVLQKGQKWQPASEQGSRYQPSLSHKPAKKIDVARITFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHC |
| M.L.....W.P....G..YQ.SLSHK.AKKI..A..TF.LY..N.QD.I..LNVKATL....SLS..LHC | |
| Retrocopy | MMLR--KLWSPIRARGW-YQLSLSHKHAKKIREASGTFYLYQVNLQDWICYLNVKATLHHEGSLSCGLHC |
| Parental | CG |
| CG | |
| Retrocopy | CG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_141 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_141 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000002317 | 1 retrocopy |
retro_mmur_141 ,
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