RetrogeneDB ID: retro_mmur_141

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1437:202303..202702(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: CIDEC
• Ensembl ID: ENSMICG00000002317
• Aliases: None
• Description: cell death-inducing DFFA-like effector c [Source:HGNC Symbol;Acc:24229]

Sequence

>retro_mmur_141
CCGCGGGGCAGGCCGGGCAGGACTCCCCGAGTGTGGCAGGGCATCGTGGCCAGGGTCTTGAGGACCTTCTCCGCAAGGTG
TGAGACTCTTTGAAGCTCGCAGACCGGCCCTTCTCGCCTGTGCTGGAGGAAGATGGCACAACTGTTGAGACTGAGGAGTA
TTTCTGAGGCCCTGACAGGGGGCACAGTGTTCATGATGCTCAGGAAGCTGTGGTCCCCCATCAGAGCAAGGGGCTGGTAC
CAACTTTCCCTCTCCCATAAACATGCCAAGAAGATCAGGGAGGCCTCCGGAACTTTCTACCTGTACCAGGTGAACCTGCA
GGACTGGATTTGTTACCTGAATGTGAAGGCAACTCTCCACCATGAAGGCTCCCTTTCCTGCGGTCTGCACTGCTGTGGG

Alignment

ORF - retro_mmur_141 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 59.15 %
• Parental protein coverage: 58.58 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PRARPYRVSTADRRVRKGVLAH-GLEDLLYKVRDILMLADKPFILVLEEDGTTVETEDYF-QALAGNTVF
          PR.RP.R......RV..G..A..GLEDLL.KV.D.L.LAD.PF..VLEEDGTTVETE.YF..AL.G.TVF
Retrocopy PRGRPGRTP----RVWQGIVAR<GLEDLLRKV*DSLKLADRPFSPVLEEDGTTVETEEYF>EALTGGTVF

Parental  MVLQKGQKWQPASEQGSRYQPSLSHKPAKKIDVARITFDLYKLNPQDFIGCLNVKATLYDTYSLSYDLHC
          M.L.....W.P....G..YQ.SLSHK.AKKI..A..TF.LY..N.QD.I..LNVKATL....SLS..LHC
Retrocopy MMLR--KLWSPIRARGW-YQLSLSHKHAKKIREASGTFYLYQVNLQDWICYLNVKATLHHEGSLSCGLHC

Parental  CG
          CG
Retrocopy CG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_141 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_141 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000002317	1 retrocopy	retro_mmur_141 ,