RetrogeneDB ID: retro_mmur_1425

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_57553:3579..4662(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: TOE1
• Ensembl ID: ENSMICG00000013614
• Aliases: None
• Description: target of EGR1, member 1 (nuclear) [Source:HGNC Symbol;Acc:15954]

Sequence

>retro_mmur_1425
GCAGCTTTGGCTCCAGCAGCTTCCTACGGTGGTGTCAGCAAAAACACAAAATCTGGGGAAGAGCGAGTGCAGGTTCCTGT
GGTGGATGTGCAAAGCAACAACTTCAAGGAGACGTGGCCTTCCCTCCTGCTGGCCATAAAGACAGCTAACTTCGTGGCTG
TGGACACGGAGCTGAGTGGGCTTGGGGACAGGAAGAGTTTGCCAAACCAGTGCATCGACGAACGTTACAAGGCTGTGTGT
CATGCTGCCAGGACCCGTTCTGTCCTCTCCCTGGGCCTTGCTTGCTTCAAGCAGCAGCTAGACAAGGGCGAACATTCCTA
CCTGGCTCAAGTGTTTAATCTCACCCTGCTGTGCATGGAGGAGAATGTCATAGAACCAAAGTCTGTGCAGTTCCTGGTAC
AGCATGGCTTCGACTTCAACCAGCAGTATGCCCAGGGCATCCCCTACCATAAGGGCAATGACAGGGTGATGAGAGCCAGA
GCCTGTCAGTACGGACACTGTTCCTGGAGCTGATCCTGGCCCGAGGCCCCTAGTGCTACACAATGGCCTTACAGACTTGG
TGTTCCTGTACCAGAACTTCTATGCACACCTCCCAGATAATCTGGGAACCTTCACCGCTGACCTGTGTGAGATGTTCCCA
GGAGGCATCTATGACACCAAATATGCTGCTGAGTTTCATGCCCGCTTCGTAGCCTCCTACTTAGAATATGCCTTCCGGAA
ATGTGAGGGGGAAAATGACAAGCAGCGGGCAGCTGGCAACCCACACCTTACCGTGGAGTTCTGCAGCTATCCTTCTAGCA
TGAGGGCCCATATTGAGTACCGCTGCCCTATGCCCCCTGGAACCCACCGCCCTCATTCCACCAGTGTCTGTGACAATCTC
TCGGCTTATGGCTGGTGTCCCCTGGGACCACAGTGTCCTCAGTCCCATGATATTGACCTTATCATTGATACAGACGAAGC
TGTGCTGGAGGACAAGCGGCGACAGCAACGGCGTAGGGAAAATCAGAGGAGGGCTTTGTTGAACCTGCCTGGGACACAGA
CCTCTGGGGAGCTAAGGATGGTCCTCCAAGAAGCAGGTTATGT

Alignment

ORF - retro_mmur_1425 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.23 %
• Parental protein coverage: 71.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  AASAPAASDGGVSKSTKSGEELVQVPVVDVQSNNFKEMWPSLLLAIKTANFVAVDTELSGLGDRKSLLNQ
          AA.APAAS.GGVSK.TKSGEE.VQVPVVDVQSNNFKE.WPSLLLAIKTANFVAVDTELSGLGDRKSL.NQ
Retrocopy AALAPAASYGGVSKNTKSGEERVQVPVVDVQSNNFKETWPSLLLAIKTANFVAVDTELSGLGDRKSLPNQ

Parental  CIEERYKAVCHAARTRSVLSLGLACFKQQLDKGKHSYLAQVFNLTLLCMEEYVIEPKSVQFLVQHGFDFN
          CI.ERYKAVCHAARTRSVLSLGLACFKQQLDKG.HSYLAQVFNLTLLCMEE.VIEPKSVQFLVQHGFDFN
Retrocopy CIDERYKAVCHAARTRSVLSLGLACFKQQLDKGEHSYLAQVFNLTLLCMEENVIEPKSVQFLVQHGFDFN

Parental  QQYAQGIPYHKGNDK-GDESQSLSVRTLFLELIRAR-RPLVLHNGLIDLVFLYQNFYAHLPDNLGTFTAD
          QQYAQGIPYHKGND..GDESQSLSVRTLFLELI.AR.RPLVLHNGL.DLVFLYQNFYAHLPDNLGTFTAD
Retrocopy QQYAQGIPYHKGNDR<GDESQSLSVRTLFLELILAR<RPLVLHNGLTDLVFLYQNFYAHLPDNLGTFTAD

Parental  LCEMFPGGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLTLEFCSYPSSMKAHIDYRCCM
          LCEMFPGGIYDTKYAAEFHARFVASYLEYAFRKCE.EN.KQRAAG.PHLT.EFCSYPSSM.AHI.YRC.M
Retrocopy LCEMFPGGIYDTKYAAEFHARFVASYLEYAFRKCEGENDKQRAAGNPHLTVEFCSYPSSMRAHIEYRCPM

Parental  PPAAHRPHSTSVCDNFSAYGWCPLGPQCPQSHDIDLIIDTDEAVLEDKRRRRRRREKRRRALLNLPGTQT
          PP..HRPHSTSVCDN.SAYGWCPLGPQCPQSHDIDLIIDTDEAVLEDKRR..RRRE..RRALLNLPGTQT
Retrocopy PPGTHRPHSTSVCDNLSAYGWCPLGPQCPQSHDIDLIIDTDEAVLEDKRRQQRRRENQRRALLNLPGTQT

Parental  SG-GAKDGPPRKQVC
          SG.GAKDGPPR...C
Retrocopy SG<GAKDGPPRSRLC

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1425 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1425 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000013614	1 retrocopy	retro_mmur_1425 ,
Otolemur garnettii	ENSOGAG00000002298	3 retrocopies	retro_ogar_2153, retro_ogar_2280, retro_ogar_3176,