RetrogeneDB ID: retro_mmur_1443

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_6067:50267..51005(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MAPKAPK5
• Ensembl ID: ENSMICG00000010509
• Aliases: None
• Description: mitogen-activated protein kinase-activated protein kinase 5 [Source:HGNC Symbol;Acc:6889]

Sequence

>retro_mmur_1443
GATGCTCCAGTGAAGTTGTGTGACTTTGGATTTGCCAAAATTGACCAAGGTGATTTGATGACACCCCAGTTCACCCCTTA
TTATGTAGCACCTCAGGTACTAGAGGCACAGAGAAGACACCAGAAGGAGAAGTCTGGCATCATACCTACCTCACCAACGC
CATACACTTATAACAAGAGCTGTGACTTGTGGTCCCTAGGAGTGATTATTTATGTGATGCTGTGCGGATACCCTCCTTTT
TACTCCAAACACCACAGCCGGACTATCCCAAAGGATATGCGAAGAAAGATCATGACAGGCAGTTTTGAGTTCCCAGAGGA
AGAGTGGAGTCAGATTTCGGAGATGGCCAAAGATGTCGTGAGAAAGCTCCTGAAAGTCAAACCAGAGGAAAGACTCACCA
TTGAGGGAGTGTTGGACCACCCCTGGCTCAACTCGACTGAGGCCCTGGATAACGTGCTACCCTCTGCTCAACTGATGATG
GATAAGGCGGTGGTTGCAGGAATCCAGCAGGCTCATGCAGAGCAACTGGCCAACATGAGAATCCAAGATCTAAAAGTCAG
CCTCAAACCCCTGCACTCAGTGAACAACCCCATTCTGCGGAAGAGGAAGTTACTTGGCACCAAGCCAAAGGATGGTGTTT
ATATCCACGACCATGAGAATGGAGCCGAGGATTCAAATGTTGCTTTGGAAAAGCTCCGAGATGTGATTGCTCAGTGTATT
CTTCCCCAGGCTGGAGAG

Alignment

ORF - retro_mmur_1443 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.59 %
• Parental protein coverage: 59.85 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII
          DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII
Retrocopy DAPVKLCDFGFAKIDQGDLMTPQFTPYYVAPQVLEAQRRHQKEKSGIIPTSPTPYTYNKSCDLWSLGVII

Parental  YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH
          YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH
Retrocopy YVMLCGYPPFYSKHHSRTIPKDMRRKIMTGSFEFPEEEWSQISEMAKDVVRKLLKVKPEERLTIEGVLDH

Parental  PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK
          PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK
Retrocopy PWLNSTEALDNVLPSAQLMMDKAVVAGIQQAHAEQLANMRIQDLKVSLKPLHSVNNPILRKRKLLGTKPK

Parental  DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAGK
          DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAG.
Retrocopy DGVYIHDHENGAEDSNVALEKLRDVIAQCILPQAGE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1443 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1443 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Loxodonta africana	ENSLAFG00000017919	1 retrocopy	retro_lafr_633,
Microcebus murinus	ENSMICG00000010509	1 retrocopy	retro_mmur_1443 ,