RetrogeneDB ID: retro_mmur_1457

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_63569:4397..5234(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: FBXW11
• Ensembl ID: ENSMICG00000004512
• Aliases: None
• Description: F-box and WD repeat domain containing 11 [Source:HGNC Symbol;Acc:13607]

Sequence

>retro_mmur_1457
ATATGGGATAAAACCAGCCTGGAATGTTTGAAGGTGTTAACAGGACACACAGGCTCTGTCCTCTGTCTCCAGTATGATGA
ATGTGTCATTATAACTGGTTCTTCAGATTCTACAGTGAGAGTCTGAGATGTGAACACGAGTGAAGTTCTTAACATGTTGA
TCCACCACAATGAAGCTGTACTGCACTTATGCTTCAGCAATGGATTGATGGTGACCTGTTCCAAGGACCGTTCCATTGCT
GTGTAGGACATGGCTTCTGCCACGGATATCACTTTACGCTGGGTCCTGGTTGGCCACCGTGCTGCTGTCAACGCAGTAGA
CTTTGACAATAAGTACATCGTGTCTGCTTCTGGTGACAGGATCATCAAAGTCTGGAGCACAAGTACCTGTGAATTTGTTC
GTACTCTGAATGTGCACAAGCGAGGCATTGCCTGTCTCCAGTACAGGGATCGGCTGGTTGTTAGCAGATCATCAGATACT
ACCATTAGGCTCTGGGATATTGAATGTGGTACCTGTTTAAGAGTCCTAGAAGGACATGAAGAATTGGTTTGATGAATCTG
GTTTGATAACAAGAGGATTGTCAGTGGGGCCTATGATGGGAAAATTAAAGTTTGGGACTTGCAAGCTGCTCTAGACCCTC
GAGCCCCAGCAAGCACATTGTGTCTGCGCACACTGGTGGAACATTCTGGACGTGTTTTTCGGCTACAGTTTGATGAGTTT
CAGATCATCAGCAGTTCCCATGATAACACCATTTTGATTTGGGATTTCTTAAATGTGCCTCCCAGTTCCCAGAATGAGAC
CCGTTCTTCTTCCAGAACATATACTTACATCTCCAGA

Alignment

ORF - retro_mmur_1457 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.47 %
• Parental protein coverage: 51.48 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  IWDKTSLECLKVLTGHTGSVLCLQYDERVIVTGSSDSTVRVWDVNTGEVLNTLIHHNEAVLHLRFSNGLM
          IWDKTSLECLKVLTGHTGSVLCLQYDE.VI.TGSSDSTVRV.DVNT.EVLN.LIHHNEAVLHL.FSNGLM
Retrocopy IWDKTSLECLKVLTGHTGSVLCLQYDECVIITGSSDSTVRV*DVNTSEVLNMLIHHNEAVLHLCFSNGLM

Parental  VTCSKDRSIAVWDMASATDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHK
          VTCSKDRSIAV.DMASATDITLR.VLVGHRAAVN.VDFD.KYIVSASGDR.IKVWSTSTCEFVRTLN.HK
Retrocopy VTCSKDRSIAV*DMASATDITLRWVLVGHRAAVNAVDFDNKYIVSASGDRIIKVWSTSTCEFVRTLNVHK

Parental  RGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAA
          RGIACLQYRDRLVVS.SSD.TIRLWDIECG.CLRVLEGHEELV..I.FDNKRIVSGAYDGKIKVWDLQAA
Retrocopy RGIACLQYRDRLVVSRSSDTTIRLWDIECGTCLRVLEGHEELV**IWFDNKRIVSGAYDGKIKVWDLQAA

Parental  LDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDDTILIWDFLNVPPSAQNETRSPSRTYTYISR
          LDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHD.TILIWDFLNVPPS.QNETRS.SRTYTYISR
Retrocopy LDPRAPASTLCLRTLVEHSGRVFRLQFDEFQIISSSHDNTILIWDFLNVPPSSQNETRSSSRTYTYISR

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1457 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1457 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 4 retrocopies.

Species	Parental gene accession	Retrocopies number
Gorilla gorilla	ENSGGOG00000007880	1 retrocopy	retro_ggor_1576,
Microcebus murinus	ENSMICG00000004512	1 retrocopy	retro_mmur_1457 ,
Macaca mulatta	ENSMMUG00000016008	1 retrocopy	retro_mmul_1596,
Nomascus leucogenys	ENSNLEG00000000338	1 retrocopy	retro_nleu_1445,