RetrogeneDB ID: | retro_mmur_1470 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_657:478542..479829(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | RUNX1T1 | ||
| Ensembl ID: | ENSMICG00000015825 | ||
| Aliases: | None | ||
| Description: | runt-related transcription factor 1; translocated to, 1 (cyclin D-related) [Source:HGNC Symbol;Acc:1535] |
Retrocopy-Parental alignment summary:
>retro_mmur_1470
CCGAGGTCAGTGTCCTTTACCCCTACATTAAGCAATGGAATCAGCCATTCTCCTCCTACCCCGAATGTGCCCCATCACCA
CCACAGAGATTCAGCAATGGTCCTGCCTCTTCCACACCATCTGCACTAACAAACCAGCAGTTGCCAGCCACCTGTGGGTG
CTCGGCAGCTCAGCAAGTCGAAACGCTTTCTCACTACTCTGCAACAGCTTGGCAATGACATCTCACCTGAGATTGGGGAG
AAGGTGCGGACTCTTGTTCTGGCATTGGTGAACTCAACGGTGACAATTGAAGAATTCCATTGCAAGCTACAAGAGGCCAC
AAACTTTCTTCTTCGTCCTTTTGTGATTCCGTTTCTCAAGGCTAACCTGCCCCTGCTGCAGCGAGAACCGCTACACTGTG
CTCGGGCAGCCGAGCAGCCCCCGTCCCAGTACCTGGCTCAGCACCAACACCTTCTGCTCAACACAAGCATCGCGTCACCT
GCTGGCTCTTCCGAGCTGCTCATGGAGGTACATGGAAAGGGGAAGAGGCCCAGTCCAGAGAGGAGAGAAGAGAATAGTTT
TGAAAGAGATGCGATTGCTCCTGAGCCACCTGAGAAGAGAGTGTGTACCATTAGCCCTGTGCCCCGGCGTAGTCCTGCTC
TCACGGTACCTCTCATGAATCCTGGGGGCCAGTTCCATCCTACGCCTCCGCCTCTTCAGCATTACACCTTAGAAGATATT
GCAACTTCACACCTGTATCAGGAACCCAACAAGGTGCTAGAACATTGAGGAGTTCGTGATAGGCACCATAATCTTAGTCT
AAATGGAAGCTATCAAGATGAGTTGGTAGACCACCGTTTGACAGAAAGAGAATGGGCTGATGAATGGAAACACCTTGACC
ATGTCCTGAATTGCATTATGGAAATGGTAGAGAAAACACGGCGCTCCATGGCAGTTCTGCGGCGCTGTCAGGAATCTGAT
CATGAAGAGCTCAACTACTGGAAAGGACGATATAATGACAACACAGACATGAGGAAAACAGGGACCGAGTTGGTCTGCAG
GCAGCACAGCCCTGGGACTACAGATTCTCTCAGCCATGATTCTCAGAGGGAATTCAGCAGTAGGCCAGGTACAGGATACG
TACCTGTGGAATTTTGGAAAAAAACAGAAGCTGTGAATAAGGTGAAGATTCAGGCCATGTCAGAAGTACAGAAGGCCGTT
GCTGAAGCAGAGCAGAAAGCCTTTGAAGTTACTGCAACAGAGAGAGCTCGAATGGAGCAAACCATCGCGGACATCAAGTG
GCAGGCG
ORF - retro_mmur_1470 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 62.07 % |
| Parental protein coverage: | 71.52 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | PRTSSFTPTTLTNGTSHSPTALNG-APSPPNGFSNGPSSSSSSSLANQQLPPACG-ARQLSKLKRFLTTL |
| PR..SFTPT.L.NG.SHSP...N..APSPP..FSNGP.SS..S.L.NQQLP..CG.ARQLSK.KRFLTTL | |
| Retrocopy | PRSVSFTPT-LSNGISHSPPTPNV<APSPPQRFSNGPASSTPSALTNQQLPATCG>ARQLSKSKRFLTTL |
| Parental | QQFGNDISPEIGERVRTLVLGLVNSTLTIEEFHSKLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLA |
| QQ.GNDISPEIGE.VRTLVL.LVNST.TIEEFH.KLQEATNF.LRPFVIPFLKANLPLLQRE.LHCAR.A | |
| Retrocopy | QQLGNDISPEIGEKVRTLVLALVNSTVTIEEFHCKLQEATNFLLRPFVIPFLKANLPLLQREPLHCARAA |
| Parental | KQNPAQYLAQHEQLLLDASTTSPVDSSELLLDVNENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPG |
| .Q.P.QYLAQH..LLL..S..SP..SSELL..V...GKR..P.R..EN.F.R.....E.P.KR.CTISP. | |
| Retrocopy | EQPPSQYLAQHQHLLLNTSIASPAGSSELLMEVHGKGKRPSPERREENSFERDAIAPEPPEKRVCTISPV |
| Parental | QRYSPNNGLSYQPNGLPHPTPPPP-QHYRLDDMAIAHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMID |
| .R.SP.........G......PPP.QHY.L.D.A..H.Y........H...RDR.....L.G..Q.E..D | |
| Retrocopy | PRRSPALTVPLMNPGGQFHPTPPPLQHYTLEDIATSHLYQEPNKVLEH*GVRDRHHNLSLNGSYQDELVD |
| Parental | HRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTVLRRCQEADREELNYWIRRYSDAEDLKKGGSSSSSH |
| HRLT.REWA.EWKHLDH.LNCIM.MVEKTRRS..VLRRCQE.D.EELNYW..RY.D..D..K.G...... | |
| Retrocopy | HRLTEREWADEWKHLDHVLNCIMEMVEKTRRSMAVLRRCQESDHEELNYWKGRYNDNTDMRKTGTELV-- |
| Parental | SRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWKKAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTE |
| .RQ.SP...D....D..REF..RP..GYVP.E.WKK..EAVN.VK.QAM.E.QKAV.EAE.KA.....TE | |
| Retrocopy | CRQHSPGTTDSLSHDSQREFSSRPGTGYVPVEFWKKT-EAVNKVKIQAMSEVQKAVAEAEQKAFEVTATE |
| Parental | RAKMERTVAEAKRQA |
| RA.ME.T.A..K.QA | |
| Retrocopy | RARMEQTIADIKWQA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1470 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1470 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000015825 | 1 retrocopy |
retro_mmur_1470 ,
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