RetrogeneDB ID: | retro_mmur_1489 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_683:428077..429074(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | FAM189A2 | ||
| Ensembl ID: | ENSMICG00000002917 | ||
| Aliases: | None | ||
| Description: | family with sequence similarity 189, member A2 [Source:HGNC Symbol;Acc:24820] |
Retrocopy-Parental alignment summary:
>retro_mmur_1489
AAAGAAAATACCTTGAAACTCTTTCCAGTCCAGCTGTGTAGTGCTGTGCATCTGCTACTTGAGAAAGTCCTCTTCGTCCT
CTGTGCCTTGAACGCCCTGACCACCATGGTCTGCTGGGTGGCTGCCACCCTATGCTACCTGCAGATATTCACAACCAGAA
GATTCTGCAATGACAAATCCCAGATTTCTGCTGAAGAAGTGCAAGAACATGGCCATATCCTAGACCTGGATAACTTCGTG
CCTCCTGTACCTCCCTCTTCCTACTTTGCCACATTTTACTCGTGCACACTCAGGATGAACCACAGCCTGGTTGGTCCTGA
TGTCATTCCACTGCTGCATATCTACAGAGCACGCATCAAAGGCATGGAAGTGTTTTGTCCTCTGGACGCCCCTACCTCTG
TATGAAGCCGTGGTGAGCCGGATGCACCAGGAGCAGGGGTCTTCATTCCAAATGCCAGAAGGGTCAGAAGCTGCTGTGAG
CCCATTGGAACCAGTCTGCACACAACTGACTCGAGGTGGGGACATTCCTAACACACCTGGAGAAGAAAGCACATCCATTT
CAACACCCAGCTCAACCCTGGTGCAGCCGGTGAGAAGCCAGAGAGCCCTCTTGTCTCCCCTGAAGACAAGATCAAGGAAC
AACCCTGTGCTCCATCATTCCGAGGACAGATCTGCCCAGGTACTCAGCTGTGCAGCCACGACTCAGACTGAAAGTAGACT
GGATCTGGCTGTGGTGACTTTGAAGAGAGGCTTGAGATCAAGAGCTTCACGATGCAGGCCACGGTCGCTAATAGATTACA
AATCTTACATAGACACCAAGCTGCTAGGGGCGTGGTTCCTGGAGCAGTCTTCATGCACTATGACCCCAGACATCCAGGAA
CTTGTAGAAAAAATTAAATCTGTTTGGAAGTCTGATGAGGAGCACATGAGGAAGCCATCACCAGTGCCAGTTTCCTGAAC
AGATCATGCCCCTTCACAGCCCTGCGCTTCCAGGGCC
ORF - retro_mmur_1489 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.01 % |
| Parental protein coverage: | 73.78 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 4 |
Retrocopy - Parental Gene Alignment:
| Parental | KENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCVDESQISVEEVEEH |
| KEN.LKLFPVQ.CSAVHLLL.KVLF.LCALNALTT.VC.VAA.L.YLQIF.TRR.C.D.SQIS.EEV.EH | |
| Retrocopy | KENTLKLFPVQLCSAVHLLLEKVLFVLCALNALTTMVCWVAATLCYLQIFTTRRFCNDKSQISAEEVQEH |
| Parental | GRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPP-PPYEAVVS |
| G.I.D.D.FVPPVPP.SYFATFYSCT.RMN...VGPDVIPL.HIY.ARIKG.EVFCPLD.P.P.YEAVVS | |
| Retrocopy | GHILDLDNFVPPVPPSSYFATFYSCTLRMNHSLVGPDVIPLLHIYRARIKGMEVFCPLDAP>PLYEAVVS |
| Parental | QMHQEQGSPFQMPEGSEAATSPLEPVCTQVVQGGDIPNTPGEESTSISTPSSSLAQPVRSRRA-LPALRT |
| .MHQEQGS.FQMPEGSEAA.SPLEPVCTQ...GGDIPNTPGEESTSISTPSS.L.QPVRS.RA.L..L.T | |
| Retrocopy | RMHQEQGSSFQMPEGSEAAVSPLEPVCTQLTRGGDIPNTPGEESTSISTPSSTLVQPVRSQRALLSPLKT |
| Parental | RSKSDPVLHHSEDRAAPVLSCEAATQTERRLDLAAVTLRRGLRSRASRCRPRSLIDYRSYIDTKLLVARF |
| RS...PVLHHSEDR.A.VLSC.A.TQTE.RLDLA.VTL.RGLRSRASRCRPRSLIDY.SYIDTKLL.A.F | |
| Retrocopy | RSRNNPVLHHSEDRSAQVLSCAATTQTESRLDLAVVTLKRGLRSRASRCRPRSLIDYKSYIDTKLLGAWF |
| Parental | LEQSSCSMTPDIHELVENIKSVLKSDEEHM-EEAITSASFL-EQIM-APLQPGASRA |
| LEQSSC.MTPDI.ELVE.IKSV.KSDEEHM.EEAITSASFL.EQIM.AP.QP.ASRA | |
| Retrocopy | LEQSSCTMTPDIQELVEKIKSVWKSDEEHM<EEAITSASFL<EQIM<APSQPCASRA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1489 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1489 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000002917 | 1 retrocopy |
retro_mmur_1489 ,
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