RetrogeneDB ID:

retro_mmur_1489

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_683:428077..429074(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FAM189A2
Ensembl ID:ENSMICG00000002917
Aliases:None
Description:family with sequence similarity 189, member A2 [Source:HGNC Symbol;Acc:24820]


Retrocopy-Parental alignment summary:






>retro_mmur_1489
AAAGAAAATACCTTGAAACTCTTTCCAGTCCAGCTGTGTAGTGCTGTGCATCTGCTACTTGAGAAAGTCCTCTTCGTCCT
CTGTGCCTTGAACGCCCTGACCACCATGGTCTGCTGGGTGGCTGCCACCCTATGCTACCTGCAGATATTCACAACCAGAA
GATTCTGCAATGACAAATCCCAGATTTCTGCTGAAGAAGTGCAAGAACATGGCCATATCCTAGACCTGGATAACTTCGTG
CCTCCTGTACCTCCCTCTTCCTACTTTGCCACATTTTACTCGTGCACACTCAGGATGAACCACAGCCTGGTTGGTCCTGA
TGTCATTCCACTGCTGCATATCTACAGAGCACGCATCAAAGGCATGGAAGTGTTTTGTCCTCTGGACGCCCCTACCTCTG
TATGAAGCCGTGGTGAGCCGGATGCACCAGGAGCAGGGGTCTTCATTCCAAATGCCAGAAGGGTCAGAAGCTGCTGTGAG
CCCATTGGAACCAGTCTGCACACAACTGACTCGAGGTGGGGACATTCCTAACACACCTGGAGAAGAAAGCACATCCATTT
CAACACCCAGCTCAACCCTGGTGCAGCCGGTGAGAAGCCAGAGAGCCCTCTTGTCTCCCCTGAAGACAAGATCAAGGAAC
AACCCTGTGCTCCATCATTCCGAGGACAGATCTGCCCAGGTACTCAGCTGTGCAGCCACGACTCAGACTGAAAGTAGACT
GGATCTGGCTGTGGTGACTTTGAAGAGAGGCTTGAGATCAAGAGCTTCACGATGCAGGCCACGGTCGCTAATAGATTACA
AATCTTACATAGACACCAAGCTGCTAGGGGCGTGGTTCCTGGAGCAGTCTTCATGCACTATGACCCCAGACATCCAGGAA
CTTGTAGAAAAAATTAAATCTGTTTGGAAGTCTGATGAGGAGCACATGAGGAAGCCATCACCAGTGCCAGTTTCCTGAAC
AGATCATGCCCCTTCACAGCCCTGCGCTTCCAGGGCC

ORF - retro_mmur_1489 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 81.01 %
Parental protein coverage: 73.78 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalKENALKLFPVQPCSAVHLLLKKVLFALCALNALTTTVCLVAAALRYLQIFATRRSCVDESQISVEEVEEH
KEN.LKLFPVQ.CSAVHLLL.KVLF.LCALNALTT.VC.VAA.L.YLQIF.TRR.C.D.SQIS.EEV.EH
RetrocopyKENTLKLFPVQLCSAVHLLLEKVLFVLCALNALTTMVCWVAATLCYLQIFTTRRFCNDKSQISAEEVQEH
ParentalGRIPDPDDFVPPVPPPSYFATFYSCTPRMNRRMVGPDVIPLPHIYGARIKGVEVFCPLDPP-PPYEAVVS
G.I.D.D.FVPPVPP.SYFATFYSCT.RMN...VGPDVIPL.HIY.ARIKG.EVFCPLD.P.P.YEAVVS
RetrocopyGHILDLDNFVPPVPPSSYFATFYSCTLRMNHSLVGPDVIPLLHIYRARIKGMEVFCPLDAP>PLYEAVVS
ParentalQMHQEQGSPFQMPEGSEAATSPLEPVCTQVVQGGDIPNTPGEESTSISTPSSSLAQPVRSRRA-LPALRT
.MHQEQGS.FQMPEGSEAA.SPLEPVCTQ...GGDIPNTPGEESTSISTPSS.L.QPVRS.RA.L..L.T
RetrocopyRMHQEQGSSFQMPEGSEAAVSPLEPVCTQLTRGGDIPNTPGEESTSISTPSSTLVQPVRSQRALLSPLKT
ParentalRSKSDPVLHHSEDRAAPVLSCEAATQTERRLDLAAVTLRRGLRSRASRCRPRSLIDYRSYIDTKLLVARF
RS...PVLHHSEDR.A.VLSC.A.TQTE.RLDLA.VTL.RGLRSRASRCRPRSLIDY.SYIDTKLL.A.F
RetrocopyRSRNNPVLHHSEDRSAQVLSCAATTQTESRLDLAVVTLKRGLRSRASRCRPRSLIDYKSYIDTKLLGAWF
ParentalLEQSSCSMTPDIHELVENIKSVLKSDEEHM-EEAITSASFL-EQIM-APLQPGASRA
LEQSSC.MTPDI.ELVE.IKSV.KSDEEHM.EEAITSASFL.EQIM.AP.QP.ASRA
RetrocopyLEQSSCTMTPDIQELVEKIKSVWKSDEEHM<EEAITSASFL<EQIM<APSQPCASRA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






RNA-Seq - click to see more details

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Microcebus murinus was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_mmur_1489 retrocopy.

TSS - click to see more details

Microcebus murinus was not studied using FANTOM5 data.

Lab - click to see more details

retro_mmur_1489 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.
Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species Parental gene accession Retrocopies number
Microcebus murinus ENSMICG00000002917 1 retrocopy
retro_mmur_1489 ,


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