RetrogeneDB ID: | retro_mmur_1508 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_7203:27676..29343(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | EIF4ENIF1 | ||
| Ensembl ID: | ENSMICG00000005470 | ||
| Aliases: | None | ||
| Description: | eukaryotic translation initiation factor 4E nuclear import factor 1 [Source:HGNC Symbol;Acc:16687] |
Retrocopy-Parental alignment summary:
>retro_mmur_1508
TCACATTCAGGAGTTGCACCGTCAGTGGAAGAGGTAGAAGCAGGGCTCAAAGGTTTGAAGGTGGATCAGCAAGTGAAAAA
TTCAACTCCCTTTATGGTAGAACACCTAGAGGAGACTCTGAGTGCTGTAACCAGCAATTGACAACTCAAGAAAGATGGAG
ACATGACTGCATTTAACAAGCTAGTGAGCACCAGGAAGGCAAATGGGACTTTGCCTTCTAAGCCCAAAGTCACTTGAAAT
CTTGAAAGCCATATGATGTCCCCTGCTGAGATTCTAGGGTAGCATGTCCCTAAGAACATCCTACAGGAACTTCTGGGCCA
ACCAATTCAGAGACTCACTTCTTCTAATGTTCTGAGTGGCTTTATGGGGAGCTTAGAGCCTACAACATCTTTACTGGACC
AAAGAGCACCCTCTCCTCCCTTGTCACAGGTGTTTCAAACTCGAGCAGCCTCAGCAGACTATCTTCACCCAAGAATACCA
TCACCAATTGGTTTTATACCAGGACCACAGTTACTCGGAGATCCATTCCAAGGCATGTGAAAACCCATGAGCCCTGTCAC
ATCCCAAATGAGCCAGCTAGAGTTACAACAGGCAGCTTTGGAGGGGGTAGCCTTGCCACATGACCTTGCTGTAAACTTCT
ACCAGCCTGGTTTTGGCAAACCACGGTGGACAGAACCAGAGATGGATTCAGAAACAGGCAACAACGAGTGACCAAGTCAC
CACCACCCGTGCACCGAGAGAATTCCTCTTCCCCAGCCCCTGCTGCCTCCATCACAAGCATGCTGTCTCCTTCCTTTAAC
CCTACTTCAGTGATTCGTAAGATGTATGAGAGCAAAGAGAAAAGCAAGGAAGAGCCAGTATCTGGAAAAACAGCTCTTGG
TGATAGTAAAGAGGATACTCAAAAGGCCTGTAAAGAAAAACTCCTGTCATCCAGCTCTGTACCCAGTGTCGATCGAGACT
CTTCTCCCACTACAAATGCCAAACTGTCAATGTTACAGTGGTCTTCATGTTCCACCCCAATGTCCCAGACCAACTGTTAC
ACCAAAGAACAAGATTATCGACCTAAAGCAACTGGGAGAGAAACACCCACCATGGCATTCCCAGTTCCAGGAACACCTTT
TCTCCGCCCTGTCCACCAAGTTCCTCTCGTCCCCCATGTCCCTATTCTTCAGCCTGCTCACCAGCTTCACCCAGGGTTGG
TACAAAGGATGCTGGCACAAGGAGTACATCCACACCATCTTCCAAGTTTGCTCCAAGCTGGTGTGCTTCCTCCTGGGATG
GATCTGACTCGTTTACAAGGAATATCCAGCCCAATCCTGGGTCAGCCCTTTTACCCTTTACCTGCTGCTAGTCGCCCTCT
CTTAGACCCCCGACCTAGGACACTGCTGCATCTGGCGATGATGCAACAGCAGCTGCAGCACTCAGTTCTGCATCCTCCAG
GCTCTGGTTCCCAGGCAGCAGCTGTCAGTGTTCAAACGATGCCTTAGAACGTGCCCCACTGCTCAGGCCTGCCTCACACG
CACTCCCAGCTGGAGCATCGCCTCAGCCAGAGGAGCAGCCCCCCCCCCCCCGGCCCCGCCAAATGGTTCGGCTTAAATGT
GCTACAACAGCCCTGGCCATCCATGCCTGCCAAAGTCACCAGTGGGGATGAATTGGAATACCGGCAG
ORF - retro_mmur_1508 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 84.11 % |
| Parental protein coverage: | 58.16 % |
| Number of stop codons detected: | 5 |
| Number of frameshifts detected: | 1 |
Retrocopy - Parental Gene Alignment:
| Parental | THSGVVLSVEEVEAGLKGLKVDQQVKNSTPFMAEHLEETLNAVTSNRQLKKDGDMTAFNKLVSTMKASGT |
| .HSGV..SVEEVEAGLKGLKVDQQVKNSTPFM.EHLEETL.AVTSN.QLKKDGDMTAFNKLVST.KA.GT | |
| Retrocopy | SHSGVAPSVEEVEAGLKGLKVDQQVKNSTPFMVEHLEETLSAVTSN*QLKKDGDMTAFNKLVSTRKANGT |
| Parental | LPSQPKVSRNLESHLMSPAEIPGQPVPKNILQELLGQPVQRPTS-HLLSGLMGSLEPTTSLLGQRAPSPP |
| LPS.PKV..NLESH.MSPAEI.G..VPKNILQELLGQP.QR.TS...LSG.MGSLEPTTSLL.QRAPSPP | |
| Retrocopy | LPSKPKVT*NLESHMMSPAEILG*HVPKNILQELLGQPIQRLTSSNVLSGFMGSLEPTTSLLDQRAPSPP |
| Parental | LSQVFQTRAASADYLRPRIPSPIGFTPGPQLLGDPFQSMRKPMSPVTAQMSQLELQQAALEGVALPHDLA |
| LSQVFQTRAASADYL.PRIPSPIGF.PGPQLLGDPFQ.M.KPMSPVT.QMSQLELQQAALEGVALPHDLA | |
| Retrocopy | LSQVFQTRAASADYLHPRIPSPIGFIPGPQLLGDPFQGM*KPMSPVTSQMSQLELQQAALEGVALPHDLA |
| Parental | VQAANFYQPGFGKPQ-MDRTRDGFRNRQQRVTKSPAPVHRGNSSSPAPAASITSMLSPSFTPTSVIRKMY |
| V...NFYQPGFGKP...DRTRDGFRNRQQRVTKSP.PVHR.NSSSPAPAASITSMLSPSF.PTSVIRKMY | |
| Retrocopy | V---NFYQPGFGKPR<VDRTRDGFRNRQQRVTKSPPPVHRENSSSPAPAASITSMLSPSFNPTSVIRKMY |
| Parental | ESKEKSKEEPAPVILALGNYK-NTREADEEKLLSSNSVSSVDRDSSPTTNTKLSTLQRSSCSTPLSQTNR |
| ESKEKSKEEP.....ALG..K..T..A..EKLLSS.SV.SVDRDSSPTTN.KLS.LQ.SSCSTP.SQTN. | |
| Retrocopy | ESKEKSKEEPVSGKTALGDSKEDTQKACKEKLLSSSSVPSVDRDSSPTTNAKLSMLQWSSCSTPMSQTNC |
| Parental | YTKEQDYRPKATGRKTPTLASPVPGTPFLRPVHQVPLVPHVPIVRPAHQLHPGLVQRMLAQGVHPQHLPS |
| YTKEQDYRPKATGR.TPT.A.PVPGTPFLRPVHQVPLVPHVPI..PAHQLHPGLVQRMLAQGVHP.HLPS | |
| Retrocopy | YTKEQDYRPKATGRETPTMAFPVPGTPFLRPVHQVPLVPHVPILQPAHQLHPGLVQRMLAQGVHPHHLPS |
| Parental | LLQAGVLPPGMDLTHLQGISGPILGQPFYPLPAASHPLLNPRPGTPLHLAMMQQQLQRSVLHPPGSGSQA |
| LLQAGVLPPGMDLT.LQGIS.PILGQPFYPLPAAS.PLL.PRP.T.LHLAMMQQQLQ.SVLHPPGSGSQA | |
| Retrocopy | LLQAGVLPPGMDLTRLQGISSPILGQPFYPLPAASRPLLDPRPRTLLHLAMMQQQLQHSVLHPPGSGSQA |
| Parental | AAVSVQTTPQNMPSRSGLPHMHSQLEHRPSQRS-SSPVGLAKWFGSDVLQQPLPSMPAKVISVDELEYRQ |
| AAVSVQT.P.N.P..SGLPH.HSQLEHR.SQRS........KWFG..VLQQP.PSMPAKV.S.DELEYRQ | |
| Retrocopy | AAVSVQTMP*NVPHCSGLPHTHSQLEHRLSQRSXXXXXXXXKWFGLNVLQQPWPSMPAKVTSGDELEYRQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1508 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1508 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000005470 | 1 retrocopy |
retro_mmur_1508 ,
|
| Otolemur garnettii | ENSOGAG00000012272 | 1 retrocopy |