RetrogeneDB ID: retro_mmur_1518

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_7461:37819..38155(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: C12orf57
• Ensembl ID: ENSMICG00000001779
• Aliases: None
• Description: chromosome 12 open reading frame 57 [Source:HGNC Symbol;Acc:29521]

Sequence

>retro_mmur_1518
ATGTGCAGCTTTTGTCATCGGATGGTGTCTCTGAGCCCCAGACAGGCCAAGGTGGTCTTGACTGAGGCCACCCAGGCCTT
CTCTGGACCCAGGAGAACACCAAGCACATGGCTCAGGACAACGCACACAAGGAATGACACGGGCGAGATGCTGCAAAGTG
CGCTGCCATGCAGATCCAGCAGGAGGTTACAATATCAGAGCTATGGCTGCTCTGCGGATGGATGGGAAGGTGTCCTTAAG
TTTTCCTAGTTGGTCCAGTCCTGTGACGTCCAAGATCCCAAGATGGCCAGCCTGTCAGGCAAGCTGAAGGTGCTGTTCCT
GCCACCCATGACACTG

Alignment

ORF - retro_mmur_1518 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.44 %
• Parental protein coverage: 88.89 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MTSASAQPAALSAEQAKVVLAEVIQAFSAPENAVGMDEARDNACNDMGKMLQFVLPVATQIQQEVIKAYG
          M.S.......LS..QAKVVL.E..QAFS.P..............ND.G.MLQ..LP............YG
Retrocopy MCSFCHRMVSLSPRQAKVVLTEATQAFSGPRRTPSTWLRTTHTRNDTGEMLQSALPCRSSRRLQ-YQSYG

Parental  FSCDG-EGVLKFARLVKSYEAQDPEIASLSGKLKALFLPPMTL
          .S.DG.EGVLKF..LV.S...QDP..ASLSGKLK.LFLPPMTL
Retrocopy CSADGWEGVLKFS*LVQSCDVQDPKMASLSGKLKVLFLPPMTL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1518 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1518 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001779	1 retrocopy	retro_mmur_1518 ,