RetrogeneDB ID: | retro_mmur_1551 | ||
Retrocopylocation | Organism: | Mouse Lemur (Microcebus murinus) | |
Coordinates: | scaffold_81597:1300..1936(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1IP1 | ||
Ensembl ID: | ENSMICG00000000893 | ||
Aliases: | None | ||
Description: | cyclin B1 interacting protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:19437] |
Percent Identity: | 73.39 % |
Parental protein coverage: | 71.57 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | TELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQMEKIYTQQIQSKD |
T...PSEEY.AMVLAG.R.EIVLDISSRALAFW.Y.VH.E.LYQEYNFSKA.GHLKQMEK...QQ...KD | |
Retrocopy | TQNCPSEEYDAMVLAGMRSEIVLDISSRALAFWMYPVHGECLYQEYNFSKAVGHLKQMEKTHIQQRHCKD |
Parental | VELTSMKGEVTSMKKVLEEYKKKFSDI-SEKLMERNRQYQKLQGLYDS-LRLRNLTIANQEGTLEPSMIT |
VELT.MK...TSMKK.LEEYKK.FSDI.SEK.ME.N.QYQ.LQG.YD....L..LTIANQEGTLEPSMIT | |
Retrocopy | VELTFMKRQFTSMKKILEEYKKNFSDI>SEKFMEHNHQYQQLQGPYDG<AWLQILTIANQEGTLEPSMIT |
Parental | QSGVFGFPVGNNSKFSLDNTPVRNRGGGDGDFQFRPFF-VGSPTAPEPSNSFFSFASPSRELQQEQVSSR |
QSGVFGF..GNNSKFSLD.......G.G..DF.....F.VGSPTAPEPSNSFFSFASP..E.QQEQV.SR | |
Retrocopy | QSGVFGFSSGNNSKFSLDIIHQFKIGDG--DFSVQTIF>VGSPTAPEPSNSFFSFASPCHESQQEQVPSR |
Parental | -AFKVKRI |
.AFKVKRI | |
Retrocopy | <AFKVKRI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009967 | 2 retrocopies | |
Homo sapiens | ENSG00000100814 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000893 | 2 retrocopies |
retro_mmur_1264, retro_mmur_1551 ,
|
Macaca mulatta | ENSMMUG00000016251 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006088 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026056 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004394 | 1 retrocopy |