RetrogeneDB ID: retro_mmur_1573

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_8511:37741..38522(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: WSB2
• Ensembl ID: ENSMICG00000005913
• Aliases: None
• Description: WD repeat and SOCS box containing 2 [Source:HGNC Symbol;Acc:19222]

Sequence

>retro_mmur_1573
CTCCTGCTTTTGAATCTTACCGGCCACCAGGATGTCGTGAGAGATCTGAGCTTCACACCCAGTAGCAGTTTGATTTTGGT
CTCTGCGTCACGGGATAAGACTCTTCGAATTTGGGACCTGAATAAACATGGTAAACAGATTCAGGTGTTATCGGGCCACC
TGCAGTGGGTTTACTGCTGTTCCATTTCGCCAGACTGTAGCATGTTGTGCTCAGCAGCTGGAGAGAAGTCTGTCTTTCTA
TGGAGCATGCGGTCCTACACGTTAATCCGGAAGCTAGAAGGCCACCAAAGCAGTGTTGTCTCTTGTAACTTTTCCCCGGA
CTCAGCCTTGCTTGTCACAGCTTCTTATGACACCAATGTGATTATGTGGGACCCCTACACTGGCGAAAGGCTGAGGTCAC
TCCGCCACAGCCCGGTCGACCATGGCATGGAAGACAGCGATGTCCACATTAGCTCATAAGATCCATGTGCTTCTCTCCAG
AGGCTTGTACCTTGCTACGGTGGCAGATGACAGACTCCTCAGGATCTGGTCCCTGGAAGTGAAAACTCCAATTGCATTTG
CTCCTATGACCAATGGTCTTTGCTGCACATTTTTTCCACATGGTGGAGTTATTGCCACAGGGACGAGAGATGGCCATGTC
CAATTCTGGACAGCTCCTAGGGTCCTATCCTCACTGAAACACTTATGCCGGAAAGCCCTTCGAAGTTTCCTAACAACTTA
CTAAGTCCTAGCACTGCCAATCTCCAAGAAGATGAAAGAGTTCCTTACATACAGGACTTTT

Alignment

ORF - retro_mmur_1573 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 95.44 %
• Parental protein coverage: 76.09 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LLLLNLTGHQDVVRDLSFTPSGSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLC
          LLLLNLTGHQDVVRDLSFTPS.SLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLC
Retrocopy LLLLNLTGHQDVVRDLSFTPSSSLILVSASRDKTLRIWDLNKHGKQIQVLSGHLQWVYCCSISPDCSMLC

Parental  SAAGEKSVFLWSMRSYTLIRKLEGHQTSVVSCDFSPDSALLVTASYDTNVIMWDPYTGEKLRSLRHSPVD
          SAAGEKSVFLWSMRSYTLIRKLEGHQ.SVVSC.FSPDSALLVTASYDTNVIMWDPYTGE.LRSLRHSPVD
Retrocopy SAAGEKSVFLWSMRSYTLIRKLEGHQSSVVSCNFSPDSALLVTASYDTNVIMWDPYTGERLRSLRHSPVD

Parental  PGMEDSDVHISS-LRSVCFSPE-GLYLATVADDRLLRIWALEVKTPIAFAPMTNGLCCTFFPHGGVIATG
          .GMEDSDVHISS..RS.CFSPE.GLYLATVADDRLLRIW.LEVKTPIAFAPMTNGLCCTFFPHGGVIATG
Retrocopy HGMEDSDVHISS<IRSMCFSPE<GLYLATVADDRLLRIWSLEVKTPIAFAPMTNGLCCTFFPHGGVIATG

Parental  TRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTYQVLALPIPKKMKEFLTYRTF
          TRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTY.VLALPI.KKMKEFLTYRTF
Retrocopy TRDGHVQFWTAPRVLSSLKHLCRKALRSFLTTY*VLALPISKKMKEFLTYRTF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1573 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1573 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 6 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000003651	1 retrocopy	retro_chof_870,
Echinops telfairi	ENSETEG00000018534	2 retrocopies	retro_etel_1750, retro_etel_2174,
Microcebus murinus	ENSMICG00000005913	1 retrocopy	retro_mmur_1573 ,
Myotis lucifugus	ENSMLUG00000002114	1 retrocopy	retro_mluc_2097,
Macaca mulatta	ENSMMUG00000010236	1 retrocopy	retro_mmul_1466,
Mus musculus	ENSMUSG00000029364	1 retrocopy	retro_mmus_810,