RetrogeneDB ID: | retro_mmur_1575 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_8558:21192..24270(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | MYH1 | ||
| Ensembl ID: | ENSMICG00000011020 | ||
| Aliases: | None | ||
| Description: | myosin, heavy chain 1, skeletal muscle, adult [Source:HGNC Symbol;Acc:7567] |
Retrocopy-Parental alignment summary:
>retro_mmur_1575
ATGAGCGGCGACACTGAGATGGAAGTGTTCGGCATGGCTGCTCCTTTCCTCCGGAAGTCGGAGAAGGAGAGGATCGAGGC
CCAGAACCAGCCCTTTGACGCCAAAACCTACTGCTTTGTGGTAGACTCAAAGGAAGAATATGCCAAGGGGAAAATCAAGA
GTTCTCAGGACAGGAGGGTCACCGTGGAAACCAAGGACAACAGGACCCTGGTGGTCAAACCCGAGGACGTGTACACCATG
AACCCCCCCAAGTTTGACAGGATCGAGGACATGGCCATGCTGACGCACCTCAACGAGCCGGCCGTGCTGTACAACCTCAA
GGACCGCTACACGTCCTGGATGATCTACACCTACTCCGGCCTCTTCTGTGTCACCATCAACCCCTACAAGTGGCTGCCGG
TGTACAACCCCGAGGTGGTGAATGGCTACTGGGGCAAGAAGCGCCAGGAGGCCCCGCCCCACATCTTCTCCATCTCCGAC
AACGCCTATCAGTTCATGCTGACCGATCGTGAAAACCAGTCTATTCTGATCACCGGAGAATCCGGGGCAGGAAAGACTGT
GAACACCAAACGGGTCATCCAGTACTTTGCAACAATTGCAGCTACTGGAGACCTCACCAAGAAGAAGGACTCCAAAATGA
AGGGGACTCTGGAAGACCAGATCATCAGTGCCAACCCGTTGCTGGAGGTCTTCGGGGACGCCAAGACCGTGAGGAACGAC
AATTCCTCCCGCTTTGGCAAGTTCATCCGAATCCACTTTGGAACGACTGGGAAGCTGGCCTCTGCAGATATTGAAACGTA
TCTGCTGGAAAAGTCAAGAGTCACCTTCCAGCTGAAGGCTGAGAGAAGCTATCACATCTTCTACCAGATTCTTTCAAACA
AGAAGCCTGAGCTCATAGAGTTGCTGCTTATTACGACCAACCCTTACGACTACCCGTTCATCAGCCAGGGTGAAATCCTG
GTGGCCAGCATAGACGATGCTGAGGAGCTGCTGGCTACAGATAGTGCCATTGACATCCTGGGCTTCAGCCCAGAGGAGAA
ATCTGGGCTCTACAAGCTGACGGGAGCCGTGATGCACTACAGGAACATGAAGTTCAAGCAGAAGCAGCGGGAGGAGCAGC
CAGAGCCAGACGGCACCAAAGTGCTGACAAAACAGCCTATCTGATGGGCCTCAACTCTTCGGACCTCCTGAAAGCCTTGT
GCTTCCCCAGAGTGAAAGTCGGGAACGAGTACGTCACCAAAGCCAAACCGTGATCAGGTTCACCACGCTGTGATTCCTGT
CCAAGTCGGTGTACGAAAAGCTGTTCCTCTGGATGGTGGCGCGCATTAACCAGCAGCTGGACACGAAGCTACCAAGACAC
CACTTCATCGGCGTCTTGGACATTGCAGGCTTTGAAATCTTTGAGTATAACAGCCTGGAGCAGCTGTGCATCAACTTCAC
CAACGAGAAACTGCAACAGTTTTTCAACCACCACATGTTCGTGCTGGAGCAGGAGGAGTACAAGAAGGAAGGCATCGAGT
GGACGTTCATCGACTTCGGGATGGACCTGGCGGCCTGCATGGAGCTCATCGAGAAGCCGATGGGCATCTTCTCCATCCTG
GAAGAGGAGTGCATGTTCCCCAAGGCAACGGACACCTCCTTCAAGAACAAGCTGTATGACCAGCACCTGGGCAAGTCCAG
CAACTTCCAGAAGCCCAAGGTGGTCAAAGGCAGGGCTGAGGCCCACTTCTCCCTGGTCCACTAAGCAGGCACCGTGGACT
ACAGTGTCTCGGGCTGGCTGGAGAAGAACAAGGACCCCCTAACGAGACTGTCGTTGGGCTGTACCAGAAGTCCTCCAACA
GGCTCCTGGCACACCTCTATGCCACCTTTGCCACGGCAGACGCTGATAGCGGGAAGAAGAAAGTTGCCAAGAAAAAGGGT
TCTTCCTTCCAAACTGTCTCTGCCATTTTCAGGGAAAATCTGAACAAGCTGATGTCCAATTTGAGAACGACTCACCCTCA
TTTTGTGCGTTGGATAATTCCCAACGAAACCAAAACCCCAGGGGCCATGGAACACAGCCTGGTCCTGCACCAGCTGCGCT
GCAACGGTGTCCTGGAGGGCATCCGCATCTGCCGGAAGGGCTTCCCCAACAGGATCCTCTACGGGGACTTCAAACAAAGA
TACCGAGTGCTGAACGCCAGTGCAATCCCTGAGGGGCAATTCATCGACAGCAAGAAGGCCTGCGAAAAGCTCCTGGCATC
CATCGACATTGACCACACGCAGTACAAATTTGGACACACCAAGGTGTTCTTCAAGGCTGGCTTGCCGGGAACCCTGGAAG
ATATGGGGGACGACCACCTGGCCAGACTGATCGCCCGCACGCAAGCCGTGTGCAGGGGCTTTCTCATGTGCGTGGAGTTC
CAGAAGATGGTGCAGAGGAGGGAGGCCATCTTCTGCATCCAGTACAACATCCGCTCATTCATGAACGTCAAGCACTGGCC
CTGGATGAAACTCTTCTTCAAGATCAAGCCTCTCCTCAAGAGTGCGGAGACAGAGAAGGAGATGGCCACCATGAAGGAGG
AGTTCCAGAAAACCAAAGACGAACTCACCAAGTCAGAGGCAAAAAGGAAGGAGCTGGAGGAAAAGTTGGTGACTCTGGTA
CAAGAGAAGAATGACCTGCAGCTCCAAGTACAAGCTGAAAGTGAAAACTTGTTGGACGCCGAGGAAAGATGCGACCAGCT
GATCAAAGCCAAATTCCAGCTCGAGGCCAAGATCAAGGAGGTGACTGAGCGAGCTGAGGACGAGGAAGAGATCAATGCTG
AGCTGACGGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAACTCAAGAAAGACATTGATGACCTTGAGCTGACACTG
GCCAAGGTGGAGAAGGAGAAGCATGCCACAGAGAACAAGGTTAAAAACCTGACTGAGGAACTCGCTGGGTTAGATGAAAC
CATTGCCAAGTTAACCACAGAGAAGAAGGCCCTCCAAGAGGCCCACCAGCAGGCCCTGGATGACCTCCAAGCTGAAGAAG
ACAAAGTCAATTCTTTGAGCAAAATCAAGAGCAAACTG
ORF - retro_mmur_1575 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 81.17 % |
| Parental protein coverage: | 53.04 % |
| Number of stop codons detected: | 2 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | MSSDAEMAVFGEAAPYLRKSEKERIEAQNKPFDAKTSVFVADPKESFVKATVQSREGGKVTAKTEGGTTV |
| MS.D.EM.VFG.AAP.LRKSEKERIEAQN.PFDAKT..FV.D.KE...K....S.....VT..T....T. | |
| Retrocopy | MSGDTEMEVFGMAAPFLRKSEKERIEAQNQPFDAKTYCFVVDSKEEYAKGKIKSSQDRRVTVETKDNRTL |
| Parental | TVKDDQVFPMNPPKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYKWLPVYNAEVV |
| .VK...V..MNPPK.D.IEDMAM.THL.EPAVLYNLK.RY..WMIYTYSGLFCVT.NPYKWLPVYN.EVV | |
| Retrocopy | VVKPEDVYTMNPPKFDRIEDMAMLTHLNEPAVLYNLKDRYTSWMIYTYSGLFCVTINPYKWLPVYNPEVV |
| Parental | TAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAVTGEKKKEES |
| ..Y.GKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIA.TG...K... | |
| Retrocopy | NGYWGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAATGDLTKKKD |
| Parental | GKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA |
| .KM.GTLEDQIISANPLLE.FG.AKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA | |
| Retrocopy | SKMKGTLEDQIISANPLLEVFGDAKTVRNDNSSRFGKFIRIHFGTTGKLASADIETYLLEKSRVTFQLKA |
| Parental | ERSYHIFYQIMSNKKPDLIEMLLITTNPYDYAFVSQGEITVPSIDDQEELMATDSAIDILGFTSDERVSI |
| ERSYHIFYQI.SNKKP.LIE.LLITTNPYDY.F.SQGEI.V.SIDD.EEL.ATDSAIDILGF...E.... | |
| Retrocopy | ERSYHIFYQILSNKKPELIELLLITTNPYDYPFISQGEILVASIDDAEELLATDSAIDILGFSPEEKSGL |
| Parental | YKLTGAVMHYGNMKFKQKQREEQAEPDGTEV-ADKAAYLQSLNSADLLKALCY-PRGKDGNYVTGQTVQQ |
| YKLTGAVMHY.NMKFKQKQREEQ.EPDGT.V.ADK.AYL..LNS.DLLKALC..P.......V..Q.... | |
| Retrocopy | YKLTGAVMHYRNMKFKQKQREEQPEPDGTKV<ADKTAYLMGLNSSDLLKALCF<PQSESRERVRHQSQTV |
| Parental | V-YNSVGALAKAVYEKMFLWMVTRINQQLDTKQPRQYFIGVLDIAGFEIFDF-SLEQLCINFTNEKLQQF |
| ........L.K.VYEK.FLWMV.RINQQLDTK.PR..FIGVLDIAGFEIF...SLEQLCINFTNEKLQQF | |
| Retrocopy | IRFTTL*FLSKSVYEKLFLWMVARINQQLDTKLPRHHFIGVLDIAGFEIFEYNSLEQLCINFTNEKLQQF |
| Parental | FNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFSILEEECMFPKATDTSFKNKLYEQHLG |
| FNHHMFVLEQEEYKKEGIEW.FIDFGMDLAAC.ELIEKPMGIFSILEEECMFPKATDTSFKNKLY.QHLG | |
| Retrocopy | FNHHMFVLEQEEYKKEGIEWTFIDFGMDLAACMELIEKPMGIFSILEEECMFPKATDTSFKNKLYDQHLG |
| Parental | KSNNFQKPKPTKGKAEAHFSLVHYAGTVDYNINGWLDKNKDPL-NETVVGLYQKSSMKTLAYL---FSGA |
| KS.NFQKPK..KG.AEAHFSLVH.AGTVDY...GWL.KNKDPL.NETVVGLYQKSS...LA.L...F..A | |
| Retrocopy | KSSNFQKPKVVKGRAEAHFSLVH*AGTVDYSVSGWLEKNKDPL<NETVVGLYQKSSNRLLAHLYATFATA |
| Parental | AAEAGGKKGGKKKGSSFQTVSALFRENLNKLMTNLRSTHPHFVRCIIPNETKTPGAMEHELVLHQLRCNG |
| .A..G.KK..KKKGSSFQTVSA.FRENLNKLM.NLR.THPHFVR.IIPNETKTPGAMEH.LVLHQLRCNG | |
| Retrocopy | DADSGKKKVAKKKGSSFQTVSAIFRENLNKLMSNLRTTHPHFVRWIIPNETKTPGAMEHSLVLHQLRCNG |
| Parental | VLEGIRICRKGFPSRIIYADFKQRYKVLNASAIPEGQFIDSKKASEKLLGSIDIDHTQYKFGHTKVFFKA |
| VLEGIRICRKGFP.RI.Y.DFKQRY.VLNASAIPEGQFIDSKKA.EKLL.SIDIDHTQYKFGHTKVFFKA | |
| Retrocopy | VLEGIRICRKGFPNRILYGDFKQRYRVLNASAIPEGQFIDSKKACEKLLASIDIDHTQYKFGHTKVFFKA |
| Parental | GLLGLLEEMRDEKLAQLITRTQARCRGFLARVEYQKMVERRESIFCIQYNIRAFMNVKHWPWMKLYFKIK |
| GL.G.LE.M.D..LA.LI.RTQA.CRGFL..VE.QKMV.RRE.IFCIQYNIR.FMNVKHWPWMKL.FKIK | |
| Retrocopy | GLPGTLEDMGDDHLARLIARTQAVCRGFLMCVEFQKMVQRREAIFCIQYNIRSFMNVKHWPWMKLFFKIK |
| Parental | PLLKSAETEKEMANMKEEFEKAKENLAKAEAKRKELEEKLVALMQEKNDLQLQVQSEADSLADAEERCDQ |
| PLLKSAETEKEMA.MKEEF.K.K..L.K.EAKRKELEEKLV.L.QEKNDLQLQVQ.E...L.DAEERCDQ | |
| Retrocopy | PLLKSAETEKEMATMKEEFQKTKDELTKSEAKRKELEEKLVTLVQEKNDLQLQVQAESENLLDAEERCDQ |
| Parental | LIKTKIQLEAKIKEATERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN |
| LIK.K.QLEAKIKE.TERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN | |
| Retrocopy | LIKAKFQLEAKIKEVTERAEDEEEINAELTAKKRKLEDECSELKKDIDDLELTLAKVEKEKHATENKVKN |
| Parental | LTEEMAGLDETIAKLTKEKKALQEAHQQTLDDLQAEEDKVNTLTKAKIKL |
| LTEE.AGLDETIAKLT.EKKALQEAHQQ.LDDLQAEEDKVN.L.K.K.KL | |
| Retrocopy | LTEELAGLDETIAKLTTEKKALQEAHQQALDDLQAEEDKVNSLSKIKSKL |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1575 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1575 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000011020 | 1 retrocopy |
retro_mmur_1575 ,
|