RetrogeneDB ID: | retro_mmur_1594 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_89142:1599..1980(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | TTPA | ||
| Ensembl ID: | ENSMICG00000000305 | ||
| Aliases: | None | ||
| Description: | tocopherol (alpha) transfer protein [Source:HGNC Symbol;Acc:12404] |
Retrocopy-Parental alignment summary:
>retro_mmur_1594
ACTCAACGGAATGGAATCAAGGCTATCTTTGATATGGAAGGTTGGCAGTTTTCCCATGCCTTTCAAATTACCCCATCTGT
AGCCAAGAAGATTGCTACAGTACTTACAGATTCCTTTCCATTGAAAGTTCGTGGCATCCATTTGATAAATGAACCAGTAA
TTTTCCATGCTGTCTTTTCCATGATTAAACCATTCCTGACTGAAAAAATTAAAAATCGGATTCATATGCATGGGGACAAT
TACAAACAAAGCTTACTTCAGCACTTCCCAGACATTCTTCCTCTGGAATATGGTGGTGAAGAATTCTCCATGGAGGACGT
TTGTCAGGAGTGGACAAATTTTATAATGAAGTCTGAAGATTATCTCAGTGGCATTTCTGAG
ORF - retro_mmur_1594 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 92.91 % |
| Parental protein coverage: | 60.48 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 0 |
Retrocopy - Parental Gene Alignment:
| Parental | TQRNGIKAIFDMEGWQFSHAFQITPSVAKKIATVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPXXXXXX |
| TQRNGIKAIFDMEGWQFSHAFQITPSVAKKIATVLTDSFPLKVRGIHLINEPVIFHAVFSMIKP...... | |
| Retrocopy | TQRNGIKAIFDMEGWQFSHAFQITPSVAKKIATVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPFLTEKI |
| Parental | XXXIHMHGDNYKQSLLQHFPDILPLEYGGEEFSMEDVCQEWTNFIMKSEDYLSGISE |
| ...IHMHGDNYKQSLLQHFPDILPLEYGGEEFSMEDVCQEWTNFIMKSEDYLSGISE | |
| Retrocopy | KNRIHMHGDNYKQSLLQHFPDILPLEYGGEEFSMEDVCQEWTNFIMKSEDYLSGISE |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1594 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1594 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000000305 | 1 retrocopy |
retro_mmur_1594 ,
|
| Tarsius syrichta | ENSTSYG00000003052 | 1 retrocopy |