RetrogeneDB ID: | retro_mmur_1608 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | scaffold_93363:3964..4737(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | ENSMICG00000006795 | |
| Aliases: | None | ||
| Status: | KNOWN_PSEUDOGENE | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | PHKG2 | ||
| Ensembl ID: | ENSMICG00000001545 | ||
| Aliases: | None | ||
| Description: | phosphorylase kinase, gamma 2 (testis) [Source:HGNC Symbol;Acc:8931] |
Retrocopy-Parental alignment summary:
>retro_mmur_1608
CTCTTTGACTATCTGACAGAGAAGGGGGACCTCTCAGAAAAAGGAAACCAGGTCCATCATGAGGTCTCTGCTGGAAGCAG
TGAGCTTTCTCCATGCCAACAACATTGTGCACCGAGACTTGAAGCCTGAGAATATTCTCCTAGATGACAATATGCAGATC
CGACTTTCAGTTTTGGGTTCTCCTGTCACTTGGAACCTGGCGAGAAGCTTCGAGAGTTGTGTGGCACCCCAGGGTATCTG
GCACCAGAGATCCTTAAATGCTCAATGGATGAAACCCACCCAGGCTATGGCAAGGAGGTCGACCTCTGGGCCTGTGGGGT
GATCTTGTTCACACTCCTGGCTGGCTCGCCACCCTTCTGGCACCGGCGCCGGATCCTGATGTCACGCATGATCATGGAGG
GCCAGTACCAGTTTAGTTCACCTGAGTGGGATGACCGTTCGAACACTGTCAAATACCTGATCTCAAGGCTGCTGCAGGTG
GATCCTGAGGAACACCTGACAGCCGACCAGGCCCTACAGCACCCCTTCTTTGAGTGTTGTGAAAGCAGCCAACCCTGGAA
CCTCACCCCCCGCCAGCGGTTCCGGGTGGCAGTGTGGACAGTGCTGGCTGCTGGACGAGTGGCCTTAAGCACCCATCGTG
TACGGCCACTGACCAAGAGTGCACTGTTGAGGGATCCTTACGCATTGCGGTCAGTGTGTCGCCTATCGACAACTGTGCCT
TCCGGCTCTATGGGCACTGGGTGAAGAAGGGTGAGCAGCAGAACCCAGCGGCC
ORF - retro_mmur_1608 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 94.25 % |
| Parental protein coverage: | 63.55 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | LFDYLTEKVALSEK-ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS-DFGFSCHLEPGE |
| LFDYLTEK..LSEK.ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS..FGFSCHLEPGE | |
| Retrocopy | LFDYLTEKGDLSEK>ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS<SFGFSCHLEPGE |
| Parental | KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQF |
| KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR.ILM.RMIMEGQYQF | |
| Retrocopy | KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRRILMSRMIMEGQYQF |
| Parental | SSPEWDDRSNTVKDLISRLLQVDPEERLTADQALQHPFFERCEGSQPWNLTPRQRFRVAVWTVLAAGRVA |
| SSPEWDDRSNTVK.LISRLLQVDPEE.LTADQALQHPFFE.CE.SQPWNLTPRQRFRVAVWTVLAAGRVA | |
| Retrocopy | SSPEWDDRSNTVKYLISRLLQVDPEEHLTADQALQHPFFECCESSQPWNLTPRQRFRVAVWTVLAAGRVA |
| Parental | LSTHRVRPLTKSALLRDPLALRSVRRL-IDNCAFRLYGHWVKKGEQQNRAA |
| LSTHRVRPLTKSALLRDP.ALRSV.RL.IDNCAFRLYGHWVKKGEQQN.AA | |
| Retrocopy | LSTHRVRPLTKSALLRDPYALRSVCRL<IDNCAFRLYGHWVKKGEQQNPAA |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1608 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1608 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000001545 | 1 retrocopy |
retro_mmur_1608 ,
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