RetrogeneDB ID: retro_mmur_1608

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_93363:3964..4737(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000006795
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: PHKG2
• Ensembl ID: ENSMICG00000001545
• Aliases: None
• Description: phosphorylase kinase, gamma 2 (testis) [Source:HGNC Symbol;Acc:8931]

Sequence

>retro_mmur_1608
CTCTTTGACTATCTGACAGAGAAGGGGGACCTCTCAGAAAAAGGAAACCAGGTCCATCATGAGGTCTCTGCTGGAAGCAG
TGAGCTTTCTCCATGCCAACAACATTGTGCACCGAGACTTGAAGCCTGAGAATATTCTCCTAGATGACAATATGCAGATC
CGACTTTCAGTTTTGGGTTCTCCTGTCACTTGGAACCTGGCGAGAAGCTTCGAGAGTTGTGTGGCACCCCAGGGTATCTG
GCACCAGAGATCCTTAAATGCTCAATGGATGAAACCCACCCAGGCTATGGCAAGGAGGTCGACCTCTGGGCCTGTGGGGT
GATCTTGTTCACACTCCTGGCTGGCTCGCCACCCTTCTGGCACCGGCGCCGGATCCTGATGTCACGCATGATCATGGAGG
GCCAGTACCAGTTTAGTTCACCTGAGTGGGATGACCGTTCGAACACTGTCAAATACCTGATCTCAAGGCTGCTGCAGGTG
GATCCTGAGGAACACCTGACAGCCGACCAGGCCCTACAGCACCCCTTCTTTGAGTGTTGTGAAAGCAGCCAACCCTGGAA
CCTCACCCCCCGCCAGCGGTTCCGGGTGGCAGTGTGGACAGTGCTGGCTGCTGGACGAGTGGCCTTAAGCACCCATCGTG
TACGGCCACTGACCAAGAGTGCACTGTTGAGGGATCCTTACGCATTGCGGTCAGTGTGTCGCCTATCGACAACTGTGCCT
TCCGGCTCTATGGGCACTGGGTGAAGAAGGGTGAGCAGCAGAACCCAGCGGCC

Alignment

ORF - retro_mmur_1608 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.25 %
• Parental protein coverage: 63.55 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 3

Retrocopy - Parental Gene Alignment:

Parental  LFDYLTEKVALSEK-ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS-DFGFSCHLEPGE
          LFDYLTEK..LSEK.ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS..FGFSCHLEPGE
Retrocopy LFDYLTEKGDLSEK>ETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLS<SFGFSCHLEPGE

Parental  KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMIMEGQYQF
          KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR.ILM.RMIMEGQYQF
Retrocopy KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRRILMSRMIMEGQYQF

Parental  SSPEWDDRSNTVKDLISRLLQVDPEERLTADQALQHPFFERCEGSQPWNLTPRQRFRVAVWTVLAAGRVA
          SSPEWDDRSNTVK.LISRLLQVDPEE.LTADQALQHPFFE.CE.SQPWNLTPRQRFRVAVWTVLAAGRVA
Retrocopy SSPEWDDRSNTVKYLISRLLQVDPEEHLTADQALQHPFFECCESSQPWNLTPRQRFRVAVWTVLAAGRVA

Parental  LSTHRVRPLTKSALLRDPLALRSVRRL-IDNCAFRLYGHWVKKGEQQNRAA
          LSTHRVRPLTKSALLRDP.ALRSV.RL.IDNCAFRLYGHWVKKGEQQN.AA
Retrocopy LSTHRVRPLTKSALLRDPYALRSVCRL<IDNCAFRLYGHWVKKGEQQNPAA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1608 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1608 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000001545	1 retrocopy	retro_mmur_1608 ,