RetrogeneDB ID: retro_mmur_1619

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_95405:152..1026(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000000891
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: ERAL1
• Ensembl ID: ENSMICG00000005345
• Aliases: None
• Description: Era-like 12S mitochondrial rRNA chaperone 1 [Source:HGNC Symbol;Acc:3424]

Sequence

>retro_mmur_1619
TTTCCTGTCTCCGAGGAAGTGCTCACCGCTCACTGCCAAGCTCTGCGTGTCATCACGGAGAAGGAGGCCCAGGTGATTCT
GTTGGTCACACCTGGCATTATCAGTCCTGTTAAACAGAAGAGGCACCACCTGGAGCTCTCTTGGTTGGAAGATCCGTGGA
AGAGTATGGAGTCTGCTGATCTTGTTGTTCTTCTTGTGGATGTCTCAGACAAGTGGACCCAGAACCAGCTCAGCGCTGAG
GTGCTCCAGTGCTTGACCCAGTACTCTCAGGTCCCCAGCATCCTTGTCCTGAACAGGGTAGATTGCTTGAAGCAAAAGTC
AGTTCCCCTGGAGCTCACGGTGGCCCTCCCCGAAGGTGTGGTCAATGGCAAGAAGCTGGGCATGAAACCAGCCTTCCGCT
CACGCCCTGGCATGCATGGCCCCAGCCCAGCAGCTAGGGCCCCAAACATAAGGTCTGTGGGAAGCCCTCAGGGGACTGGC
CGGCCCCGCTTCCAGGAGATCCTCATGTTGTCAGCCCTAAGCCAGGACGATGTAAAAACACCAGAGAAATACTTCCTGGC
ACAGGCCCAGCCAGGGCCCTGCGAGTTCCACAGTGGAGTCGTCACTAGCCAGACACCGAAGGGATCCGCGCCAACACCAT
CCGAGAGAAGCTCCTAGAGCACCTGCCCCAGGAGGGCCCTACGGAGTGCAGCAGAAGACGATCTTTGTGGGACGAAGGAC
CAAGTGGGAGCTGGTGATCAAACAGAAGCTTCTGGTACCCAAAGAATCTCATGTGAGGCTCCTGATTTGTTCCAAAGGGC
CAAGGAAATCTCTCATATTATCACAGGAGGGGGGGCGGGAGACCTCAGGGACATCTTTCCTCTGTGAGGTTCAA

Alignment

ORF - retro_mmur_1619 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 77.85 %
• Parental protein coverage: 66.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 7

Retrocopy - Parental Gene Alignment:

Parental  FPVSKKVHTTRCQALGVITEKEAQVILLDTPGIISPVKQKRHNLELSLLEDPWKSMESADLVVVLVDVSD
          FPVS..V.T..CQAL.VITEKEAQVILL.TPGIISPVKQKRH.LELS.LEDPWKSMESADLVV.LVDVSD
Retrocopy FPVSEEVLTAHCQALRVITEKEAQVILLVTPGIISPVKQKRHHLELSWLEDPWKSMESADLVVLLVDVSD

Parental  KWTRNQLSPQVLQCLTQFSQVPSILVMNKVDCLKQKSVLLELTTALTEGVVNGKKLEIKQAFRSHPGMDG
          KWT.NQLS..VLQCLTQ.SQVPSILV.N.VDCLKQKSV.LELT.AL.EGVVNGKKL..K.AFRS.PGM.G
Retrocopy KWTQNQLSAEVLQCLTQYSQVPSILVLNRVDCLKQKSVPLELTVALPEGVVNGKKLGMKPAFRSRPGMHG

Parental  PSPVAKDPNIKSVGSPRRTGWPHFQEIFMLSALNQDEVKTLKKYLLAQAQPGPWEFHSGVLTSQTP-EEI
          PSP.A..PNI.SVGSP..TG.P.FQEI.MLSAL.QD.VKT..KY.LAQAQPGP.EFHSGV.TSQTP.E.I
Retrocopy PSPAARAPNIRSVGSPQGTGRPRFQEILMLSALSQDDVKTPEKYFLAQAQPGPCEFHSGVVTSQTP<EGI

Parental  CANIIREKLLEHLPQE-VPYSVQQKTI-LWDEGPSG-ELMIEQRLLVPRESHVRLLI-GPKGQ-VISH-I
          .AN.IREKLLEHLPQE..PY.VQQKTI.LWDEGPSG.EL.I.Q.LLVP.ESHVRLLI..PKGQ..ISH.I
Retrocopy RANTIREKLLEHLPQE<GPYGVQQKTI>LWDEGPSG<ELVIKQKLLVPKESHVRLLI>VPKGQ>EISHII

Parental  AQKVARDLMDI-FLCDVQ
          ....A.DL.DI.FLC.VQ
Retrocopy TGGGAGDLRDI>FLCEVQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_1619 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_1619 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000011551	1 retrocopy	retro_etel_1933,
Microcebus murinus	ENSMICG00000005345	1 retrocopy	retro_mmur_1619 ,
Otolemur garnettii	ENSOGAG00000011082	1 retrocopy	retro_ogar_3218,