RetrogeneDB ID: retro_mmur_174

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1567:477593..478730(-)
• Located in intron of: ENSMICG00000008410

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000005597
• Aliases: None
• Description: None

Sequence

>retro_mmur_174
GTGGCTATTGTTGAGCCCAGCAAGAGACACTTCTATCAGCCAATCTGGACGCTGGTGGGTGCTGGTGCCAAACAGTTGTC
CTCATCTGGTAGTCCCACAGAGAGTGCGATTCCATCCAGTGTAGAATGGATCAAAGCTAGAGCGGTTGAACTGAACCCAG
ACAAGGACTGCATCCACACAGACAATGGCAAGGAGATCTCCTACAAATATCTTACTATTGCTCTTGGAATCCAGCTGGAC
TATGAGAAGATTAAAGGCTCCCTGAAGGTTTTGTGCATCCCAAAATAGGATCTCATTATTCAGTGAAGACTGTAGAGAAG
ACATGGAAAGCTCTGCAGGACTTCAAGGAGGGCAGTGCCCGTCTTTACCTTCCCAAATACTCCAGTGAAGTGTGCTGGAG
CCCCCCAGAAGATCGTGTATTTGTCAGAAACCTATTTCAGGAAGGTGGGGAAGCAATCCAAGGCCAATATCATTTTTAAC
ACTTCTCTTGGAGGAATTCTGGGGGTTAAGAAGTATGCAGATGCCCTGCAGGAGATTATCCAGGAGAGGAATATCACCAT
TAACTGCAAGCAAAACCTCACTTAAGACTGAGCTGAGAAACAAGAGGCTGTTTTTGAGAACCTGAATAAACCTGGGGAGA
CCCACGTGATTTCATATGAAATGATTCATGTCACACCACCCATGAGTCCACCAGATGTCCACAAGACCAGTCCTGTGGCT
GATGCTGGCTGGGTGGATGTGGATAAAGAAACTCTGCCGCACAAGAGGTACCCAAATGTGTCTGGAATTGGGGACTGTGC
CAACCTTCCTATGTTAAAGACTGCTGCTGCAGCAGCTGCCCAGTCAGGGATACTTGAGAGAACAATTTCTCTGATTATGA
AGAATCAAGCACCAAAGAAGAAGTATGATGGCTACACATCATGTCCACTGGTGACCGGCTACAACTGTGTGATTCTTGCA
GAGTCTGACTACAATGCTCAGCGGCTAGAAACCTTCCCCTTTGATCAGAGCAAAGAGCGACTGTCCATGTGCCCCATGAA
AGCTGACCTGATCCCTTTCCTGTACTGGAATATGATGCTGAGGGGCTACTGGAGAGGACCAGCCTTTCTGCGGAAGTTGT
TTCATCTGAGTATGAGT

Alignment

ORF - retro_mmur_174 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.51 %
• Parental protein coverage: 84.44 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  VAIVEPSERHFYQPIWTLVGAGAKQLSSSGRPTASVIPSGVEWIKARVVELNPDKDCIRTDNGKEXXXXX
          VAIVEPS.RHFYQPIWTLVGAGAKQLSSSG.PT.S.IPS.VEWIKAR.VELNPDKDCI.TDNGKE.....
Retrocopy VAIVEPSKRHFYQPIWTLVGAGAKQLSSSGSPTESAIPSSVEWIKARAVELNPDKDCIHTDNGKEISYKY

Parental  XXXXXXXXXXXXXIKG-LPEGFAHPKIGSNYSVKTVEKTWKALQDFKEGNA-VFTFPNTPVKCAGAPQKI
          .............IKG.LPEGF.HPKIGS.YSVKTVEKTWKALQDFKEG.A.VFTFPNTPVKCAGAPQKI
Retrocopy LTIALGIQLDYEKIKG<LPEGFVHPKIGSHYSVKTVEKTWKALQDFKEGSA>VFTFPNTPVKCAGAPQKI

Parental  MYLAEAYFRKVGKRSKANIIFNTSLGGIFGVKKYADALQEIIKERNITVNYKQNLIEVRADKQEAVFENL
          .YL.E.YFRKVGK.SKANIIFNTSLGGI.GVKKYADALQEII.ERNIT.N.KQNL....A.KQEAVFENL
Retrocopy VYLSETYFRKVGKQSKANIIFNTSLGGILGVKKYADALQEIIQERNITINCKQNLT*D*AEKQEAVFENL

Parental  DKPGETHVISYEMLHVTPPMSSPDVLKTSPVADAGGWVDVDKETLQHKRYPNVFGIGDCTNLPTSKTAAA
          .KPGETHVISYEM.HVTPPMS.PDV.KTSPVADAG.WVDVDKETL.HKRYPNV.GIGDC.NLP..KTAAA
Retrocopy NKPGETHVISYEMIHVTPPMSPPDVHKTSPVADAG-WVDVDKETLPHKRYPNVSGIGDCANLPMLKTAAA

Parental  AAAQSGILDRTISLIMKNQTPKKKYDGYTSCPLVTGYNRVILAEFDYNAQPLETFPFDQSKERLSMYLMK
          AAAQSGIL.RTISLIMKNQ.PKKKYDGYTSCPLVTGYN.VILAE.DYNAQ.LETFPFDQSKERLSM..MK
Retrocopy AAAQSGILERTISLIMKNQAPKKKYDGYTSCPLVTGYNCVILAESDYNAQRLETFPFDQSKERLSMCPMK

Parental  ADLMPFLYWNMMLRGYWGGPAFLRKLFHLGMS
          ADL.PFLYWNMMLRGYW.GPAFLRKLFHL.MS
Retrocopy ADLIPFLYWNMMLRGYWRGPAFLRKLFHLSMS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_174 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_174 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000005597	1 retrocopy	retro_mmur_174 ,
Oryctolagus cuniculus	ENSOCUG00000014347	1 retrocopy	retro_ocun_441,