RetrogeneDB ID: retro_mmur_207

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_1766:67040..67619(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ZNF740
• Ensembl ID: ENSMICG00000014191
• Aliases: None
• Description: zinc finger protein 740 [Source:HGNC Symbol;Acc:27465]

Sequence

>retro_mmur_207
ATGGCTCAAGCGAGTCTCCTGGCATGTGAAGGCCTAGCAGGTGTAAGTTTGGTTCCCACTGCAGCCAGCAAGAAGATGAT
GCTGAGCCAGATTGCCAGCAAGCAGGCCGAGAATGGAGAACGGGCAGGTAGCCCTGATGTGCTGAGGTGCTCAAGTCAGG
GCCACCGAAAAGACAGTGATAAGTCCCGGAGCCGCAAAGATGATGACAGCTTGGCTGAGGCCTCTCATTCAAAAAAGACT
GTTAAAAAGGTGGTGGTAGTGGAACAAAATGGTTCTTTTCAAGTAAAGATTCCCAAAAATTTTGTTTGTGAACACTGCTT
TAGAGCCTTTAGGAGCAGTTACCACCTAAAGAGGCACATCCTTATTCACACCGGTGAGAAGCCGTTTGAGTGTGATATAT
GTGATGTGCGCTTCATCCAAAAGTACCACCTGGAACGGCACAAGCGTGTGCACAGTGGCAAAAAGCCTTACAAGTGTGAA
CGGTGTCATCAGTGTTTTTCTCGGACAGATCGATTACTCAGACACAAACGGATGTGCCAAGGGTGCCAGTCCAAGACTTC
CGACGGGCAGTGTTCTCTA

Alignment

ORF - retro_mmur_207 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 96.92 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSDKSRSRKDDDS
          MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSDKSRSRKDDDS
Retrocopy MAQASLLACEGLAGVSLVPTAASKKMMLSQIASKQAENGERAGSPDVLRCSSQGHRKDSDKSRSRKDDDS

Parental  LAEASHSKKTVKKAGVVVVEQNGSFQVKIPKNFVCEHCFGAFRSSYHLKRHILIHTGEKPFECDICDMRF
          LAEASHSKKTVKK..VVVVEQNGSFQVKIPKNFVCEHCF.AFRSSYHLKRHILIHTGEKPFECDICD.RF
Retrocopy LAEASHSKKTVKK--VVVVEQNGSFQVKIPKNFVCEHCFRAFRSSYHLKRHILIHTGEKPFECDICDVRF

Parental  IQKYHLERHKRVHSGEKPYKCERCHQCFSRTDRLLRHKRMCQGCQSKTSDGQFSL
          IQKYHLERHKRVHSG.KPYKCERCHQCFSRTDRLLRHKRMCQGCQSKTSDGQ.SL
Retrocopy IQKYHLERHKRVHSGKKPYKCERCHQCFSRTDRLLRHKRMCQGCQSKTSDGQCSL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_207 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_207 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Dasypus novemcinctus	ENSDNOG00000012901	1 retrocopy	retro_dnov_1842,
Microcebus murinus	ENSMICG00000014191	1 retrocopy	retro_mmur_207 ,
Tupaia belangeri	ENSTBEG00000015437	1 retrocopy	retro_tbel_1280,