RetrogeneDB ID: retro_mmur_22

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_14359:4591..5260(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000013197
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000017724
• Aliases: None
• Description: None

Sequence

>retro_mmur_22
AGCCAGTGCATCAATCAGATGAAGGAAGTGAAGGAGCAATGTGAGGAGCGAATAGAAGAGGTCACCAAAAAGGGAAATGA
AGCTGTAGTTTCCAGAGACCTGAGTGAAAAAAAAGACCCAAGTCAGCAGCTCCAAACTCTCAGCAAGCCTCAGCCCAGGC
TGCAGGGAGCAGGCCTGCCACGGGCAGAGGTGCCACAAAGGGAAGGAAACACACCCAGTGATGGTGAGTCCCAGATGCCA
ACCCCCAGTTCTAAGGTGGCTTTGGAATTGAAGAGTCGAGGTGAGAAAGAGGAAACTAATGAGATCCAGTTTGTCAGCGA
GAAGGAGCCTCAGAGGGACAGCCTGGGGCTGCTGCAGGAGCCAGGCCAGGAGCAGGCTGTGGAGGACAGACCTGTGGGCG
GAAGAGACTTGGGGAGAGCCAGAGAACTAAGCCGAACCCCACAAGTACCAGCTGCCCTGTTGCTGAGCCAGGAAAATCAG
GAGACTGAAGACCCTGAGCGGGACCAGCTTGTCATTCCCGATGGGCAGGAGGAGGAGCAGGATGCTGCTGAGGAAGGGAG
AAACGAGCAAAAACTGGGAGGAGATGATGACTACAACATGGATGAAAATGAGGCGGAATCTGAAACAGACAAACAGGCAG
CCCTTGCAGGGAATGACAAAAACCTAAAT

Alignment

ORF - retro_mmur_22 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.21 %
• Parental protein coverage: 54.13 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  SQCINQMKEVKEQCEERIEEVTKKGNEAVVSRDLSEKKDPSQQLQTLSKPQPRLQGAGLLQAEVPQREGN
          SQCINQMKEVKEQCEERIEEVTKKGNEAVVSRDLSEKKDPSQQLQTLSKPQPRLQGAGL..AEVPQREGN
Retrocopy SQCINQMKEVKEQCEERIEEVTKKGNEAVVSRDLSEKKDPSQQLQTLSKPQPRLQGAGLPRAEVPQREGN

Parental  TPSDGESQMPTPSSKVALELKSRGKKEETNEIQFVSEKEPQRDSLGLPQEPGQEQAVEDRPVGGRDLGRA
          TPSDGESQMPTPSSKVALELKSRG.KEETNEIQFVSEKEPQRDSLGL.QEPGQEQAVEDRPVGGRDLGRA
Retrocopy TPSDGESQMPTPSSKVALELKSRGEKEETNEIQFVSEKEPQRDSLGLLQEPGQEQAVEDRPVGGRDLGRA

Parental  RELSRTPQVPAALLLSQENQETEDPERDQLVIPDGQEEEQDAAEEGRNEQKLGGDDDYNMDENEAESETD
          RELSRTPQVPAALLLSQENQETEDPERDQLVIPDGQEEEQDAAEEGRNEQKLGGDDDYNMDENEAESETD
Retrocopy RELSRTPQVPAALLLSQENQETEDPERDQLVIPDGQEEEQDAAEEGRNEQKLGGDDDYNMDENEAESETD

Parental  KQAALAGNDKNLN
          KQAALAGNDKNLN
Retrocopy KQAALAGNDKNLN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_22 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_22 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000014995	1 retrocopy	retro_cjac_153,
Microcebus murinus	ENSMICG00000017724	1 retrocopy	retro_mmur_22 ,