RetrogeneDB ID: | retro_mmur_223 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_1854:67108..67995(+) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | CRTC2 | ||
| Ensembl ID: | ENSMICG00000010302 | ||
| Aliases: | None | ||
| Description: | CREB regulated transcription coactivator 2 [Source:HGNC Symbol;Acc:27301] |
Retrocopy-Parental alignment summary:
>retro_mmur_223
AGTGTCTCTGCCCTCTCCTCCTCCATTTCCCCCCCTGTTCTGAGCCCCCCCTTGTCCATCTTCGACCCCTGGGACCCCCC
ACCATCATCGTGTGCCTCTCAGCCCCCTGAGTTTGCCCGCAGGCCCCAATGATGCCAGAAGCTCCCAACAGCAGCTGCCC
AAACAGTTTTTGCCAACGATGTCACCCACCTTGTCTTCCATCACTCAGGGTGTCCCCCTGGACACGAGTAAACTGCCCAC
TGAGCAGCGGCTGCCCCCATATCCCTAGATCTCCACCCCGGCCTGATTCTGCCCACCCAGCCACCCACGCCAATGCCTCT
ACAGCAGCCAGGCTCCCTGCTCAGGCCTGCTCAGTGCAGCCCTCAGGTGGGCAGCCCCCCTGCAGAGCAGACAGCGTGTT
ATGCAACACTATACCCACCTGGGCCCGGTGGGCATGGGCAGAAGTCTTACCACCGGCCGATGAGTGACTTCAGGTTGGGG
AACCTCGAGCAGTTTGGCATGAAGAGCCCATCAGCCAGCCTAGCGCTGGACCCCTCTGGCTTTTCCAAAGAGCCTGAATT
TTTAGGGGGTGAGGGACCAGTGGGCGGCCCCCAGGATCCCCACTCCCTCCACTACCAGAACTTGACCCCCTGTTCCTGCC
ACGGCTCAGGGCCTAACATCATCCTCACAGGGAGGCTCCTCTCCAGGTTTCTCTAAGGAGATTGCAGCAGCCCTGGCCGG
AGTGCCTGGCTGTGAGTGTCAGCAGCTGGGTTGGAACCGGGGCTGGGCTAGAAGATGAGCTTCGCATGGAGCCACTGGGC
CTGGAAAGGCTAAACGTGCTGAGTGACCCCTGTGCCCTGCTGCCTGACCCCATGTCGGAGGATTCATTCCACAGTGACCA
GCTCCAG
ORF - retro_mmur_223 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 79.93 % |
| Parental protein coverage: | 53.83 % |
| Number of stop codons detected: | 1 |
| Number of frameshifts detected: | 8 |
Retrocopy - Parental Gene Alignment:
| Parental | SSSSSSSTSSP-VLGAPSYPASTPGASPRHRRVPLSPLSLPAGPADARRSQQQLPKQFSPTMSPTLSSIT |
| S.S..SS..SP....AP..P.STPG..P.H.RVPLSPLSLPAGP.DAR.SQQQLPKQF.PTMSPTLSSIT | |
| Retrocopy | SVSALSSSISP>LF*APPCPSSTPG-TPHHHRVPLSPLSLPAGPNDARSSQQQLPKQFLPTMSPTLSSIT |
| Parental | QGVPLDTSKLSTDQRLPPY-PYSPP-GLVLPTQPPTPKPLQQPG-LPSQACSVQPSGGQP-PGRQLH-YG |
| QGVPLDTSKL.T.QRLPPY.P.SPP.GL.LPTQPPTP.PLQQPG.LP.QACSVQPSGGQP.P..Q...Y. | |
| Retrocopy | QGVPLDTSKLPTEQRLPPY>PRSPP>GLILPTQPPTPMPLQQPG<LPAQACSVQPSGGQP>PAEQTACYA |
| Parental | TLYPPGPSGHGQQSYHRPMSDFSLGNLEQFGMESPSASLALDPSGFSEGPGFLGVEGPVGGPQDPHTLNH |
| TLYPPGP.GHGQ.SYHRPMSDF.LGNLEQFGM.SPSASLALDPSGFS..P.FLG.EGPVGGPQDPH.L.. | |
| Retrocopy | TLYPPGPGGHGQKSYHRPMSDFRLGNLEQFGMKSPSASLALDPSGFSKEPEFLGGEGPVGGPQDPHSLHY |
| Parental | QNLTHCSRHGSGPNIILT-EDSSPGFSKEIAAALAGVPGFE-VSAAGLELGL-GLEDELRMEPLGLEGLN |
| QNLT.CS.HGSGPNIILT...SSPGFSKEIAAALAGVPG.E.VSAAGLE.GL.GLEDELRMEPLGLE.LN | |
| Retrocopy | QNLTPCSCHGSGPNIILT>GGSSPGFSKEIAAALAGVPGCE<VSAAGLEPGL<GLEDELRMEPLGLERLN |
| Parental | MLSDPCALLPDPAVEDSFRSDRLQ |
| .LSDPCALLPDP..EDSF.SD.LQ | |
| Retrocopy | VLSDPCALLPDPMSEDSFHSDQLQ |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_223 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_223 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000010302 | 1 retrocopy |
retro_mmur_223 ,
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