RetrogeneDB ID: retro_mmur_24

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_49711:100..883(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000000699
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000000076
• Aliases: None
• Description: None

Sequence

>retro_mmur_24
ATGGCTTTGAGTCTAGGTTGGAAAGCTCGCAGGAGCTGCTGTGGTCTCCTTCTGCAGGCTGTGAGACGTCCTCCTTTGTT
TCCCTGGGCCAACTGTTCCTGGAGAGGAGCTGGAAGCTTTTTGGATCCTGAGATGAGAGCTTTCCTGGAGGAGAACACTG
AAGTCACCGGCAGTGGCAGCCTCACCCCCGAAATCCAATTGCGGCTCTTGACCCCCAGGTGCAAGTTGTGGTGGGAAAGA
GCTGACCTGTGGCCCCACAGTGATCCTTACTGGGCAATCTACTGGCCAGGAGGCCAAGCCCTGTCTAGGTATCTTCTGGA
TCATCCTGATGTTGTCAGAGGGAAATCTGTATTAGATCTGGGGAGTGGATGTGGAGCTACAGCCATTGCTGCTAAGATGA
GTGGAGCATCAAGGATCTTGGCCAATGACATAGATCCTATTGCAGGAATGGCTATTACACTAAATTGTGAATTGAACCGA
CTGAATCCTTTGCCCATTTTAACCAAAAACATTTTGGATTTGAAACAAGATAAGTGGGACCTTGTTGTTCTTGGAGATAT
GTTTTATGATGAAAGTCTTGCAGATAGTCTTCATCAGTGGCTGAAGAATTGCGTCTGGACCTACAGAACTCGAGTACTGA
TTGGGGACCCTGGGAGGCCCCAGTTCAGCGGACACAGCATTCAGCATCAGCTGCACAAAGTGGTAGAATATTCACTTCCA
GAGCCTACCAGGCAGGAAAACAATGGACTGACGACAAGCACAGTGTGGGATTTTCAGCCTTGA

Alignment

ORF - retro_mmur_24 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.22 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MALSLGWKARRSCCVLLLQAVRRPPLFP-ANCSWRGAGSFLDPEMRAFLEENTEVTGSGSLTPEIQLRLL
          MALSLGWKARRSCC.LLLQAVRRPPLFP.ANCSWRGAGSFLDPEMRAFLEENTEVTGSGSLTPEIQLRLL
Retrocopy MALSLGWKARRSCCGLLLQAVRRPPLFPWANCSWRGAGSFLDPEMRAFLEENTEVTGSGSLTPEIQLRLL

Parental  TPRCKLWWERADLWPHSDPYWAIYWPGGQALSRYLLDHPDVVRGKSVLDLGSGCGATAIAAKMSGASRIL
          TPRCKLWWERADLWPHSDPYWAIYWPGGQALSRYLLDHPDVVRGKSVLDLGSGCGATAIAAKMSGASRIL
Retrocopy TPRCKLWWERADLWPHSDPYWAIYWPGGQALSRYLLDHPDVVRGKSVLDLGSGCGATAIAAKMSGASRIL

Parental  ANDIDPIAGMAITLNCELNRLNPLPILTKNILDLKQDKWDLVVLGDMFYDESLADSLHQWLKNCVWTYRT
          ANDIDPIAGMAITLNCELNRLNPLPILTKNILDLKQDKWDLVVLGDMFYDESLADSLHQWLKNCVWTYRT
Retrocopy ANDIDPIAGMAITLNCELNRLNPLPILTKNILDLKQDKWDLVVLGDMFYDESLADSLHQWLKNCVWTYRT

Parental  RVLIGDPGRPQFSGHSIQHQLHKVVEYSLPEPTRQENNGLTTSTVW
          RVLIGDPGRPQFSGHSIQHQLHKVVEYSLPEPTRQENNGLTTSTVW
Retrocopy RVLIGDPGRPQFSGHSIQHQLHKVVEYSLPEPTRQENNGLTTSTVW

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_24 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_24 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000000076	1 retrocopy	retro_mmur_24 ,