RetrogeneDB ID: retro_mmur_285

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_219:47078..47465(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ARHGDIA
• Ensembl ID: ENSMICG00000002895
• Aliases: None
• Description: Rho GDP dissociation inhibitor (GDI) alpha [Source:HGNC Symbol;Acc:678]

Sequence

>retro_mmur_285
ACCCTGGTGTGCACCTCAGCCCCGGGCCCCCTGGAGCTGGACCTGACAGGTGATCTGGAGAGCTTCAAGAAGCAGTTCTT
TGTGCTGAAGGAGGGTGTGGAATACCGGATAAAAATCTCATTCCGGGTGAACAGGCAGATTGTGTCCGGCATGAAGTACA
TCCAGCTCACGTACAGGAAAGGCTTCAAGATCGACAAGACCGACTACATGGTGGGGAGCTACGGGCCCCGGGCAGAGGAG
TATGAGTTCCTGACCCCCGTGGAGGAGGCGCCCAAGGGCATGCTGGCTCGCGGCAGCTACAAGATCAAGTCCCGCTTCAC
AGACGACGACAAGACTGACCACCTTTCCTGGGAGTGGAATCTCACCATCAAAAAGGAGTGGAAGGAC

Alignment

ORF - retro_mmur_285 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 92.25 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  TLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYLQHTYRKGVKIDKTDYM
          TLVC.SAPGPLELDLTGDLESFKKQ.FVLKEGVEYRIKISFRVNR.IVSGMKY.Q.TYRKG.KIDKTDYM
Retrocopy TLVCTSAPGPLELDLTGDLESFKKQFFVLKEGVEYRIKISFRVNRQIVSGMKYIQLTYRKGFKIDKTDYM

Parental  VGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDKTDHLSWEWYLTINKEWKD
          VGSYGPRAEEYEFLTP.EEAPKGMLARGSY.IKSRFTDDDKTDHLSWEW.LTI.KEWKD
Retrocopy VGSYGPRAEEYEFLTPVEEAPKGMLARGSYKIKSRFTDDDKTDHLSWEWNLTIKKEWKD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_285 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_285 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Felis catus	ENSFCAG00000030567	1 retrocopy	retro_fcat_584,
Microcebus murinus	ENSMICG00000002895	1 retrocopy	retro_mmur_285 ,
Tarsius syrichta	ENSTSYG00000012215	1 retrocopy	retro_tsyr_1220,