RetrogeneDB ID: retro_mmur_32

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_17726:3920..5660(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000009253
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000009532
• Aliases: None
• Description: None

Sequence

>retro_mmur_32
GACACCTTTGATGAGCTTTTTGATGCTGACGGTGACGGCGAGTCCTACACAGAAGAGGCTGATGACGGAGACGTGGAGAA
GGCTGACGACCAGAAGAAAAATCTGGCCACTCTCTTTGGAGATACCGGGGACTTAACAGATGACGAAGCTCCTGCATTGC
CACTCGCTCCTGCCCCCCGACAAGAGAAAACAAATCAGGAGTTACAAGATGAATTAAGGAAGTTGCAAGAGCAAATGAAG
TCCTTGCAAGAACAGCTCAAAGTAGCAACAATTAAACAGGCTGCAAGTCCAGCCCTTCCGTGTAACCCCCTTGATAAGTC
TCCACGGCCTCCCCTTAAGGAAAAGAAAGTTCAAAGAATTCAGGAATCAGCATGCTTTTCTGCAGAGCTTGATGTCCCTG
TTCAACCAAGAACCAAGCGGGTGGCTCGGATGCCAAAAGCTTCACCTACAGACCCCACAAGTTCATCTTCGAGGATGACA
AGTGTACCCTCCCAACCACTGCAAACTATTCCTGGGAACAAACCTAGTGGAGTGACTCGAGATAAGAATGCAGGGGCCCA
GGGGAGCTCTGGGGAGACGTCTCAGACGGTGTCTGTGGAAGCCTTCTCCGGCCTGCGGCTCAGGCGGCCTCGAGTATCCT
CTACAGAAATGAACAAGAAAATGACTGGCCGAAAACTGATCCGACTGTCTCAGGTCAAGGAAAAGATGCCACGTGAGAAA
CTAGAAGAAATCGACTGGGTGACATTTGGGGTTATAGTGAAGAAAGTTACTCCACAGAGTATGAACAGTGGGAAAACATT
CAGCATCTGGCGACTGAATGATCTTCGTGACCTGACACAGCATGTGTCCTTGTTCTTGTTTGGAGAAGTTCACAAAGAGC
TCTGGAAGACAGAACAAGGCACTGTCATCGGGTTGCTCAATGCTAACCCCATGAAGCCCAAGGATGGCTCAGAGGAGGTG
TGCTTATCTATTGATCATCCCCAGAAGGTCTTAATTATGGGTGAAGCTCTTGACCTGGGAACCTGTAAAGCTAAGAAGAA
GAATGGAGAACCGTGCACACAGATTGTTAACTTGCGCGACTGCGAGTACTGTCAGTATCACGTCCAGGCCCAGTACAGGA
AGCTCAGCGCCAGGCGAGCCGACCTGCAGTCCACCTTCTCCGGAGGACGAATTCCAAAGAAGTTCGCCCGCAAAGGCGCC
AGCCTAAAAGAACGGCTGTGTCAGGACGGTTTTTACTACGGAGGAGTCTCTTCTTCATCTTATGCAGCCTCAATTGCAGC
GGCTGCTGCTCCTAAGAAGAAGATTCAAACCACGCTGACCAATCTGGTTGTCAAGGGTGCAGACTTGGTCATTCAGGAAA
CAAAACAAAAACTGGGAATACCCCAGAAGAGCTTGTCTTGCTCAGAGGAGTTCAAGGAACTGATGGAGCTGCCAACGTTT
GGAGCCAGAAACTTGAAACAACATTTAGCCAAAGCCTCGGTTTCAGGGATCAGAGGAACCCCGAAAGCTGCCATCCAGTC
CATCTCGGCATCAGCCCTCTTGAAGCAGCAGAAGCAGCAAATGTTGGAGATGAGGAAAAGGAAATTGGAAGATGCCCAGA
GACGGTTTCTCCAAAGTTCCAGTGAAGCCAAGAGCCCGGCTGTGCCATCCTCATCTCGACATCCACCTGCTCAGTCTCCT
CGGACAGGGGCTGAGTTCCCCAGGCTGGAAGGAAGCCCAGCCACGTGGACGCCCAGGCTT

Alignment

ORF - retro_mmur_32 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.15 %
• Parental protein coverage: 66.9 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  DTFDELFDADGDGESYTEEADDET--EADDQKENLAALFGDTGDLTDDEAPALPLAPAPRQEKTNQELQD
          DTFDELFDADGDGESYTEEADD.....ADDQK.NLA.LFGDTGDLTDDEAPALPLAPAPRQEKTNQELQD
Retrocopy DTFDELFDADGDGESYTEEADDGDVEKADDQKKNLATLFGDTGDLTDDEAPALPLAPAPRQEKTNQELQD

Parental  ELRKLQEQMKSLQEQLKVATIKQAASPALPCNPLVDKSPRPPLKEKKVQRMQESACFSAELDXXXXXXXX
          ELRKLQEQMKSLQEQLKVATIKQAASPALPCNPL.DKSPRPPLKEKKVQR.QESACFSAELD........
Retrocopy ELRKLQEQMKSLQEQLKVATIKQAASPALPCNPL-DKSPRPPLKEKKVQRIQESACFSAELDVPVQPRTK

Parental  XXXXXXXXXXXXPKSSSSRMTSAPSQPLQTIPGNKPSGVTRDKNAGTQGSSGETSQTVSVEAFSGLRLRR
          ............P.SSSSRMTS.PSQPLQTIPGNKPSGVTRDKNAG.QGSSGETSQTVSVEAFSGLRLRR
Retrocopy RVARMPKASPTDPTSSSSRMTSVPSQPLQTIPGNKPSGVTRDKNAGAQGSSGETSQTVSVEAFSGLRLRR

Parental  PRVSSTEMNKKMTGRKLIRLSQVKEKMAREKLEEIDWVTFGVIVKKVTPQSMNSGKTFSIWRLNDLRDLT
          PRVSSTEMNKKMTGRKLIRLSQVKEKM.REKLEEIDWVTFGVIVKKVTPQSMNSGKTFSIWRLNDLRDLT
Retrocopy PRVSSTEMNKKMTGRKLIRLSQVKEKMPREKLEEIDWVTFGVIVKKVTPQSMNSGKTFSIWRLNDLRDLT

Parental  QHVSLFLFGEVHKELWKTEQGTVIGLLNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKAKKKNG
          QHVSLFLFGEVHKELWKTEQGTVIGLLNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKAKKKNG
Retrocopy QHVSLFLFGEVHKELWKTEQGTVIGLLNANPMKPKDGSEEVCLSIDHPQKVLIMGEALDLGTCKAKKKNG

Parental  EPCTQIVNLRDCEYCQYHVQAQYRKLSARRADLQSTFSGGRIPKKFARKGASLKERLCQDGFYYGGVSSS
          EPCTQIVNLRDCEYCQYHVQAQYRKLSARRADLQSTFSGGRIPKKFARKGASLKERLCQDGFYYGGVSSS
Retrocopy EPCTQIVNLRDCEYCQYHVQAQYRKLSARRADLQSTFSGGRIPKKFARKGASLKERLCQDGFYYGGVSSS

Parental  SYAASIAAAAAPKKKIQTTLTNLVVKGADLVIQETKQKLGIPQKSLSCSEEFKELMELPTFGARNLKQHL
          SYAASIAAAAAPKKKIQTTLTNLVVKGADLVIQETKQKLGIPQKSLSCSEEFKELMELPTFGARNLKQHL
Retrocopy SYAASIAAAAAPKKKIQTTLTNLVVKGADLVIQETKQKLGIPQKSLSCSEEFKELMELPTFGARNLKQHL

Parental  AKASVSGIRGTPKAAIQSISASALLKQQKQQMLEMRKRKLEDAQR-FLQSSSEAKSPAVPSSSRHPPAQS
          AKASVSGIRGTPKAAIQSISASALLKQQKQQMLEMRKRKLEDAQR.FLQSSSEAKSPAVPSSSRHPPAQS
Retrocopy AKASVSGIRGTPKAAIQSISASALLKQQKQQMLEMRKRKLEDAQRRFLQSSSEAKSPAVPSSSRHPPAQS

Parental  PRTGAEFPRLEGSPATWTPRL
          PRTGAEFPRLEGSPATWTPRL
Retrocopy PRTGAEFPRLEGSPATWTPRL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_32 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_32 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000009532	1 retrocopy	retro_mmur_32 ,