RetrogeneDB ID: retro_mmur_331

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2420:250668..251261(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: KLHDC2
• Ensembl ID: ENSMICG00000007045
• Aliases: None
• Description: kelch domain containing 2 [Source:HGNC Symbol;Acc:20231]

Sequence

>retro_mmur_331
CAGCCTAGGACTCCTGGTAAAGCACCTTCCACCTGTGCTGCCCATGCCTGTGCAGCTGTTGGAAACAAAGTCTTTGTGTT
TGGAGGCAGATATTGAGATGCTTGAATGAATGATCTTCACTATCTTAATCTGGATACATGGAAGTGGAATGAATTAATTC
CACAAGGCATATGCCCAGTTGGCCGATCTTGACACTCACTAACACCAGTTTCTTCAGATCATTTTCTTTTCTTCAGAGGA
TTTACCACTGATGGACAGCCACTAAGTGATGCCTGGACTTACTGCATCAGTAAAAGTGAATGGATACAGTTTAATCATCC
CCTATTCTGAAAAAAACAAAGTTATGACATACAGCTTGTGCCAGTGATGGAGAAGTAATTGTTTGCGTTGGGCGTGCCAA
CAACCTGCCTGTCCATCACAGAGCTGCACACAGTAATGAAATACTTATATTTTCAGTTCAACCAAAATCTCTTGTATGGC
TAAGCTTAGAAGCAGTCAGTTGCTTTAAAGAAATGTTAGCCAACTCATGGGACTGCCTTTCAAAACACTTCGGTGTTAAT
CAGAGGTTTTGTAGTAACGACACTTCTGGATCT

Alignment

ORF - retro_mmur_331 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 81.68 %
• Parental protein coverage: 50.63 %
• Number of stop codons detected: 4
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  QPITTGKAPSPRAAHACATVGNKGFVFGGRYRDARMNDLHYLNLDTWEWNELIPQGICPVGRSWHSLTPV
          QP.T.GKAPS..AAHACA.VGNK.FVFGGRY.DA.MNDLHYLNLDTW.WNELIPQGICPVGRS.HSLTPV
Retrocopy QPRTPGKAPSTCAAHACAAVGNKVFVFGGRY*DA*MNDLHYLNLDTWKWNELIPQGICPVGRS*HSLTPV

Parental  SSDHLFLFGGFTTDKQPLSDAWTYCISKNEWIQFNH-PYSE-KPRLWHTACASDEGEVIVFGGCANNLLV
          SSDH...F.GFTTD.QPLSDAWTYCISK.EWIQFNH.PYSE.K..L.HTACASD.GEVIV..G.ANNL.V
Retrocopy SSDHFLFFRGFTTDGQPLSDAWTYCISKSEWIQFNH>PYSE>KTKL*HTACASD-GEVIVCVGRANNLPV

Parental  HHRAAHSNEILIFSVQPKSLVRLSLEAVICFKEMLANAWNCLPKHLLHSVNQRFGSNNTSGS
          HHRAAHSNEILIFSVQPKSLV.LSLEAV.CFKEMLAN.W.CL.KH....VNQRF.SN.TSGS
Retrocopy HHRAAHSNEILIFSVQPKSLVWLSLEAVSCFKEMLANSWDCLSKHF--GVNQRFCSNDTSGS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_331 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_331 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007045	1 retrocopy	retro_mmur_331 ,
Rattus norvegicus	ENSRNOG00000004474	1 retrocopy	retro_rnor_124,