RetrogeneDB ID: | retro_mmur_334 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_244:76536..77418(+) | ||
| Located in intron of: | ENSMICG00000009316 | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | NT5DC4 | ||
| Ensembl ID: | ENSMICG00000013300 | ||
| Aliases: | None | ||
| Description: | 5'-nucleotidase domain containing 4 [Source:HGNC Symbol;Acc:27678] |
Retrocopy-Parental alignment summary:
>retro_mmur_334
GTGTTTGTGAACAGATTTTAGCCATGGAGAAAATAAAGTGTTTTGGTTTTGATATGGATTACACCCTTGCTGTGTACAAG
TCCCCAGAGTATGAATCCCTTGGCTTTGAGCTTACTGTGGAAAGATTAGTTTCTATTGGCTATCCCCAGGAGCTACTCAG
TTTTGCTTATGAGTCTACATTCCCTACCAGGGGGCTTGTCTTTGACACACTATATGGAAATCTTTTGAAAGTTGATGCCT
ATGGAAACCTCTTGGTTTGTGCACATGGATTTAACTTCATAAGGGGACCAGAAACTAGAAAGCAATATCCAAATAAATTT
ATCCAACGAGATGACACTGAAAGATTTTACATTCTGAACACATTATTCAACCTACCAGAGACCTACCTGTTGGCCTGCCT
AGTAGATTTTTTTACTAATTGTCCCAGATATACCAGCTGTGAAACAGGATTTAAAGATGGGGACCCCTTCATGTCCTACC
AGAGTATGTTCAGGATGTAAGAGATGCTGTTGACTGGGTTCATTATAAGGGCTCCCTTAAGGAGAAGACAGTTGAAAATC
TTGAGAAGTATGTAGTCAAAGATGGAAAACTGCCTTTGCTTCTGAGCCGGATGAAAGAAGTAGGGAAAGTGTTTCTTGCC
TCCAACAGTGACTGTATATATACAGATAAAATTATGATTTACCTGTTCGATTTCCCACATGGCCCCAAGCCTGAGAGCTC
CCACCGACCATGGCAGTCCTACTTTGACCTGATCTTGGTGGATGCACGGAAACCACTCTTTTTTGGAGAAGGCACAGTAC
TGCGTCAAGTGGATACCAAAACTGGCGAGCTGAAAATTGGTACCTACACAGGCCCCTACAGCATGACATCGTCCACTCAG
GA
ORF - retro_mmur_334 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 63.76 % |
| Parental protein coverage: | 65.99 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 3 |
Retrocopy - Parental Gene Alignment:
| Parental | IFVNRS-LALGKIRCFGFDMDYTLAAYKSPAYEALAFELLLERLVCIGYPHEILRYTYDPAFPTRGLV-D |
| .FVNR..LA..KI.CFGFDMDYTLA.YKSP.YE.L.FEL..ERLV.IGYP.E.L...Y...FPTRGLV.D | |
| Retrocopy | VFVNRF<LAMEKIKCFGFDMDYTLAVYKSPEYESLGFELTVERLVSIGYPQELLSFAYESTFPTRGLVFD |
| Parental | ALYGNLLKVDAHGNVLLGAHGFTFLSEAEIWSFYPSKFIQRDDLQRFHVLNTLFNLPETYLYACLVDFFS |
| .LYGNLLKVDA.GN.L..AHGF.F....E....YP.KFIQRDD..RF..LNTLFNLPETYL.ACLVDFF. | |
| Retrocopy | TLYGNLLKVDAYGNLLVCAHGFNFIRGPETRKQYPNKFIQRDDTERFYILNTLFNLPETYLLACLVDFFT |
| Parental | GCSRYTNCDTGYQHGNLFMSFRSLF-QDVTEAMNNIHQSGCLKEKTLENLEKYVEKDARIPVLLGKMKEV |
| .C.RYT.C.TG...G..FMS..S.F.QDV..A....H..G.LKEKT.ENLEKYV.KD...P.LL..MKEV | |
| Retrocopy | NCPRYTSCETGFKDGDPFMSYQSMF<QDVRDAVDWVHYKGSLKEKTVENLEKYVVKDGKLPLLLSRMKEV |
| Parental | GKVFLATNSSYDYTDAIMTYLFGVSEAAAPA---RPWRSFFDLIVVDTQKPRFFAEGTVLRQVNTDSGKL |
| GKVFLA.NS...YTD.IM.YLF.......P....RPW.S.FDLI.VD..KP.FF.EGTVLRQV.T..G.L | |
| Retrocopy | GKVFLASNSDCIYTDKIMIYLFDFPHGPKPESSHRPWQSYFDLILVDARKPLFFGEGTVLRQVDTKTGEL |
| Parental | RVGTYTGPH-QHCAVYSG |
| ..GTYTGP..QH..V.SG | |
| Retrocopy | KIGTYTGPY<QHDIVHSG |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_334 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_334 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 2 parental genes, and 2 retrocopies.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000012316 | 1 retrocopy | |
| Microcebus murinus | ENSMICG00000013300 | 1 retrocopy |
retro_mmur_334 ,
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