RetrogeneDB ID: retro_mmur_350

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2542:257021..257346(-)
• Located in intron of: ENSMICG00000015281

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000002208
• Aliases: None
• Description: None

Sequence

>retro_mmur_350
CCTGTGGAAAAAGGGGAAGGCCTTGCTTCAGTCATGAAGAATGCTAAAACCCAGTACTTTCCCATCTTTGAAAAAATTTT
GAAAGCGCACAGAGAGGATTTTCTCATTGGCAACAAATTCAGCTGGGCAGACATACAATTGCTGGAAACTATTTTAATGG
CAGAAGAACTCAATATTTCTGTTCTTTCTCACTTCCTTCTGCTAAAGGCATTTAAAAGAAGAATCAGCAACATCCCCACA
ATTAAGAAGTTCCTGCAGCCTGGGAGTCAAAGAAAGCCACCCTGACAGCCGCTATGTTGAACTAGTCAGGAACATTCTGC
AGTTC

Alignment

ORF - retro_mmur_350 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 52.25 %
• Parental protein coverage: 83.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  PEEQVNRLALIKEQTTNRYFPAFEKVLKSHGQDYLVGNRLSRADIHLVELIYHVEELLPGVTASFPLLKA
          P.E....LA.........YFP.FEK.LK.H..D.L.GN..S.ADI.L.E.I...EEL...V...F.LLKA
Retrocopy PVEKGEGLASVMKNAKTQYFPIFEKILKAHREDFLIGNKFSWADIQLLETILMAEELNISVLSHFLLLKA

Parental  LKTRISNLPSVKKFLQPGSQRKPP-ITAEAL-EKARKVFKF
          .K.RISN.P..KKFLQPGSQRKPP..TA..L.E..R....F
Retrocopy FKRRISNIPTIKKFLQPGSQRKPP<LTAAML<ELVRNILQF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_350 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_350 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000011287	1 retrocopy	retro_cjac_4055,
Dasypus novemcinctus	ENSDNOG00000009819	1 retrocopy	retro_dnov_2390,
Homo sapiens	ENSG00000182793	1 retrocopy	retro_hsap_2366,
Gorilla gorilla	ENSGGOG00000027587	1 retrocopy	retro_ggor_1797,
Microcebus murinus	ENSMICG00000002208	1 retrocopy	retro_mmur_350 ,
Otolemur garnettii	ENSOGAG00000003726	1 retrocopy	retro_ogar_345,
Pan troglodytes	ENSPTRG00000032453	1 retrocopy	retro_ptro_1732,
Tupaia belangeri	ENSTBEG00000001413	1 retrocopy	retro_tbel_2120,