RetrogeneDB ID: retro_mmur_370

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2641:188839..189244(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: MRPL43
• Ensembl ID: ENSMICG00000000014
• Aliases: None
• Description: mitochondrial ribosomal protein L43 [Source:HGNC Symbol;Acc:14517]

Sequence

>retro_mmur_370
CAGCTGCAGCGTCTCAGCTTCAGCCTCAGCCGCGACGGGCCCTCTTCCCGCGGTGCTAGGGAGTTCATCGAACGGGAGGT
GACCGACTTCGCCCGACGGAACCCCGGGGTCGTAATGTACGTGAACCTGCGGCCCTGCTGCGTGCCCAGAGTAGTGGCCG
AATACCTTAACGGGGCTGTGCGCGAGGAGAGCATGCACTGCAAGTCGGTCGAGGAGATCGTGACGCTAGTGCAGAAGTTG
GCAGACCAGTCTGGCCTGGAGGTGATCCGCATCCGAAAGCCCTTCCACACGGACAGCCCTAGCATCCAGGGTCAGTGGCA
GCCCTTCACCAACAAACCGACCACGTTTGGTGGGCTACGCCCCCGAGAGGTCCTGGATCTTGCCTCAGCCAAGGTGCAAG
CACAG

Alignment

ORF - retro_mmur_370 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 97.04 %
• Parental protein coverage: 61.93 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  QLQRLSFSLSRDGPSSRGAREFIEREVTDFARRNPGVVMYVNLRPCCVPRVVAEYLNGAVREESMHCKSV
          QLQRLSFSLSRDGPSSRGAREFIEREVTDFARRNPGVVMYVNLRPCCVPRVVAEYLNGAVREESMHCKSV
Retrocopy QLQRLSFSLSRDGPSSRGAREFIEREVTDFARRNPGVVMYVNLRPCCVPRVVAEYLNGAVREESMHCKSV

Parental  EEIVTLVQKLADQSGLEVIRIRKPFHTDSPSIQGQWQPFTNKPTTFGGLRPREVLDLASAEDAAE
          EEIVTLVQKLADQSGLEVIRIRKPFHTDSPSIQGQWQPFTNKPTTFGGLRPREVLDLASA...A.
Retrocopy EEIVTLVQKLADQSGLEVIRIRKPFHTDSPSIQGQWQPFTNKPTTFGGLRPREVLDLASAKVQAQ

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_370 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_370 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 6 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000009742	1 retrocopy	retro_cfam_1720,
Erinaceus europaeus	ENSEEUG00000004807	1 retrocopy	retro_eeur_444,
Echinops telfairi	ENSETEG00000012498	1 retrocopy	retro_etel_2213,
Microcebus murinus	ENSMICG00000000014	1 retrocopy	retro_mmur_370 ,
Macaca mulatta	ENSMMUG00000010679	1 retrocopy	retro_mmul_1882,
Nomascus leucogenys	ENSNLEG00000014812	1 retrocopy	retro_nleu_17,