RetrogeneDB ID: retro_mmur_410

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2875:605039..605358(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ORAOV1
• Ensembl ID: ENSMICG00000003061
• Aliases: None
• Description: oral cancer overexpressed 1 [Source:HGNC Symbol;Acc:17589]

Sequence

>retro_mmur_410
GCTGGGAGCCAGGACGCGCTCGACGCCCTCGTGACGGCGGATGAGAGGTTTCGCGGGGAAGGGTATGAGGAAGGCTACGA
AGAAGGCAGTAGTTTGGGTTTAATTAAAGGAAGACAATATGGCGCGTTACAGGGAGCTAAAATTGGATCCGAGATCGGGT
GCTGTCAAGGTTTTGCTGTTGCGCGGAAATGTCTCTCGCACGGTTGTGACCCTGAGAAAGGCAGCAGAAAAGATGAACGT
CTTAGAATCACTGATTGGAGTGATGCAGAAATTCCCTCATGATGACCCTACTTACGATAAACTCCACGAAGACTTAGAA

Alignment

ORF - retro_mmur_410 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 76.64 %
• Parental protein coverage: 77.37 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  AGSQDMFDAIVMADERFHGEGYQEGYEEGSSLGIIEGRQYGTLHGAKIGSEIGCYQGFAIAWKCLLHSCA
          AGSQD..DA.V.ADERF.GEGY.EGYEEGSSLG.I.GRQYG.L.GAKIGSEIGC.QGFA.A.KCL.H.C.
Retrocopy AGSQDALDALVTADERFRGEGYEEGYEEGSSLGLIKGRQYGALQGAKIGSEIGCCQGFAVARKCLSHGCD

Parental  TEKDSR-KMKVLESLIGMIQRFPYDDPTYDKLHEDLD
          .EK.SR.KM.VLESLIG..Q.FP.DDPTYDKLHEDL.
Retrocopy PEKGSR>KMNVLESLIGVMQKFPHDDPTYDKLHEDLE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_410 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_410 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species	Parental gene accession	Retrocopies number
Ailuropoda melanoleuca	ENSAMEG00000001983	1 retrocopy	retro_amel_309,
Felis catus	ENSFCAG00000026606	1 retrocopy	retro_fcat_1023,
Homo sapiens	ENSG00000149716	1 retrocopy	retro_hsap_3131,
Microcebus murinus	ENSMICG00000003061	1 retrocopy	retro_mmur_410 ,
Tursiops truncatus	ENSTTRG00000017307	6 retrocopies	retro_ttru_1122, retro_ttru_1249, retro_ttru_1408, retro_ttru_1785, retro_ttru_272, retro_ttru_860,