RetrogeneDB ID:

retro_mmur_410

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:GeneScaffold_2875:605039..605358(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:ORAOV1
Ensembl ID:ENSMICG00000003061
Aliases:None
Description:oral cancer overexpressed 1 [Source:HGNC Symbol;Acc:17589]


Retrocopy-Parental alignment summary:






>retro_mmur_410
GCTGGGAGCCAGGACGCGCTCGACGCCCTCGTGACGGCGGATGAGAGGTTTCGCGGGGAAGGGTATGAGGAAGGCTACGA
AGAAGGCAGTAGTTTGGGTTTAATTAAAGGAAGACAATATGGCGCGTTACAGGGAGCTAAAATTGGATCCGAGATCGGGT
GCTGTCAAGGTTTTGCTGTTGCGCGGAAATGTCTCTCGCACGGTTGTGACCCTGAGAAAGGCAGCAGAAAAGATGAACGT
CTTAGAATCACTGATTGGAGTGATGCAGAAATTCCCTCATGATGACCCTACTTACGATAAACTCCACGAAGACTTAGAA

ORF - retro_mmur_410 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 76.64 %
Parental protein coverage: 77.37 %
Number of stop codons detected: 0
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalAGSQDMFDAIVMADERFHGEGYQEGYEEGSSLGIIEGRQYGTLHGAKIGSEIGCYQGFAIAWKCLLHSCA
AGSQD..DA.V.ADERF.GEGY.EGYEEGSSLG.I.GRQYG.L.GAKIGSEIGC.QGFA.A.KCL.H.C.
RetrocopyAGSQDALDALVTADERFRGEGYEEGYEEGSSLGLIKGRQYGALQGAKIGSEIGCCQGFAVARKCLSHGCD
ParentalTEKDSR-KMKVLESLIGMIQRFPYDDPTYDKLHEDLD
.EK.SR.KM.VLESLIG..Q.FP.DDPTYDKLHEDL.
RetrocopyPEKGSR>KMNVLESLIGVMQKFPHDDPTYDKLHEDLE

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_410 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_410 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000019831 retrocopy
Felis catus ENSFCAG000000266061 retrocopy
Homo sapiens ENSG000001497161 retrocopy
Microcebus murinus ENSMICG00000003061 1 retrocopy
retro_mmur_410 ,
Tursiops truncatus ENSTTRG000000173076 retrocopies



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