RetrogeneDB ID: retro_mmur_44

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_2173:96851..97355(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000014643
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000002870
• Aliases: None
• Description: None

Sequence

>retro_mmur_44
AAGACTGGACTGTATGCATATAAAGTCTTCGGTGTTCTGGAGGACTGCTCACCAGCTCTACTCGCAGATGTCTATATGGA
CTTAGACTATAGAAAGCGGTGGGACGAGTATGTTCAAGAACTCTATGAACGTGAGTGCAATGGACAGACAGTGGTCTACT
GGGAAGTGAAGTACCCTTTTCCCATGTCCAACAGAGATTATGTCTACACATGGCAGCTGCGAGAGCTGGACATGGCCGGG
CGGAAGATCTGCGTGGTCCTGGCCCAGAGCACCTCAGTGCCTCAGCTTCCGGAGAGGCAGGGGGTGGTCCGGGTGAAGCA
GTACAAGCAGAGCCTGGCGATCGAGAGTGATGGCAAGAAGGGGAGCAAAGTTTTCATGTATTACTTCGATAACCCAGGTG
GCCAGATTCCGTCCTGGCTCATTAACATGGTTGCCCAGAGTGGAGTTCCTAACTTCCTGAGAGACATGGCAAAAGCCTGT
CGGAACTACCCCAAGAAAACCTAA

Alignment

ORF - retro_mmur_44 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 99.21 %
• Parental protein coverage: 59.43 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YERECNGQTVVYWEVKYPFPMSNRDYVYTRQLRELDMAGRKICVVLAQSTSVPQLPERQGVVRVKQYKQS
          YERECNGQTVVYWEVKYPFPMSNRDYVYT.QLRELDMAGRKICVVLAQSTSVPQLPERQGVVRVKQYKQS
Retrocopy YERECNGQTVVYWEVKYPFPMSNRDYVYTWQLRELDMAGRKICVVLAQSTSVPQLPERQGVVRVKQYKQS

Parental  LAIESDGKKGSKVFMYYFDNPGGQIPSWLINMVAQSGVPNFLRDMAKACRNYPKKT
          LAIESDGKKGSKVFMYYFDNPGGQIPSWLINMVAQSGVPNFLRDMAKACRNYPKKT
Retrocopy LAIESDGKKGSKVFMYYFDNPGGQIPSWLINMVAQSGVPNFLRDMAKACRNYPKKT

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_44 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_44 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000002870	1 retrocopy	retro_mmur_44 ,
Vicugna pacos	ENSVPAG00000011704	1 retrocopy	retro_vpac_638,