RetrogeneDB ID: retro_mmur_444

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_315:457376..458575(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000009136
• Aliases: None
• Description: None

Sequence

>retro_mmur_444
ATGGCGGCCACGGCCACGATGGCGACCTCGGGCTGGGCGCGGAAGCGGCTGCTCAAAGAGGAAGACATGACCAAAGTGGA
ATTCGAGACCAGCGAGGAGGTGGACGTGACCCCCACGTTCGACACTATGGGCCTGCGGGAGGACCTGCTGCGCGGCATCT
ACGCCTACGGTTTTGAAAACCCTTCAGCGATCCAACAGCGAGCTACCAAGCAGATAATTAAAGGGAGAGACGTCATCGCA
CAGTCTCAGTCTGGCACAGGTAAAACAGCCACCTTCAGTATTTCAGTCCTTCAGTGCTTGGATATTCAGGTTCCTGACAC
CCAGGCTCTGATCTTGGCCCCCACGCGAGAGCTGGCCGTGCAGATCCAGAAGGGCCTGCTTGCTCTTGGTGACTACATGA
ACGTCCAGTGCCACGCCTGCATCGGGGGCACCAATGTGGGCGAGGACATCAGGAAGCTGGATTACGGACAGCACGTCGTC
GCAGGCACACCAGGGCGCGTCTTTGATGTGATTCGTCGAAGAAGTTTAAGGACACGAGCTATCAAGATGTTGGTTTGGGA
TGAGGCTGATGAAATGTTGACTAAAGGTTTCAAAGAGCAGATTTATGACGTGTACAGGTACCTGCCTCCGGCCACACAGG
TGGTCCTTATCAGTGCCACGCTGCCCCGTGAAATCCTGGAAATGACCACCAAGTTCATGACGGACCCAATCCGCATCCTG
CTAAAACGTGATGAGTTGACTCTGGAAGGCATCAAACAGTTTTTTGTGGCAGTGGAAAGAGAAGAGTGGAAGTTTGACAC
CCTGTGTGATCTCTACGACACACTGACCATCGCGCAGGCGGTCATCTTCTGTAACACCAAGAGGAAGGTTGACTGGCTGA
CAGAGAAGATGAGAGAAGCCAATGTCACCGTGTCCTCGATGCACGGAGACATGCCGCAGAAGGAGCGGAGTCCATCGTGA
AGGAGGTCCGGGCCGGCGCCAGCCGCGTGCTCATCTCCACAGACGTCTGGGCCAGGGGCTTGGATGTCCCGCAGGTGTCC
CTCATCATTAACTACGACCTGCCCAATAACAGAGAGTTGTACATACACAGAATTGGGAGATCAGGTCGATATGGTCAACA
GGGTGTGGCCATCAATTTTGTAAAGAACGACGACATCCGCATCCTAGATACTGAGCAGTACTGCTCCACTCAGATGGAT

Alignment

ORF - retro_mmur_444 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 94.28 %
• Parental protein coverage: 100.0 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  MAATATMATSGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIK
          MAATATMATSG.ARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFE.PSAIQQRA.K
Retrocopy MAATATMATSGWARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFENPSAIQQRATK

Parental  QIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQCHAC
          QIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQV..TQALILAPTRELAVQIQKGLLALGDYMNVQCHAC
Retrocopy QIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVPDTQALILAPTRELAVQIQKGLLALGDYMNVQCHAC

Parental  IGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP
          IGGTNVGEDIRKLDYGQHVVAGTPGRVFD.IRRRSLRTRAIKMLV.DEADEML.KGFKEQIYDVYRYLPP
Retrocopy IGGTNVGEDIRKLDYGQHVVAGTPGRVFDVIRRRSLRTRAIKMLVWDEADEMLTKGFKEQIYDVYRYLPP

Parental  ATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQA
          ATQVVLISATLP.EILEMT.KFMTDPIRIL.KRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTI.QA
Retrocopy ATQVVLISATLPREILEMTTKFMTDPIRILLKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTIAQA

Parental  VIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER-ESIMKEFRSGASRVLISTDVWARGLDVPQVSLI
          VIFCNTKRKVDWLTEKMREAN.TVSSMHGDMPQKER.ESI.KE.R.GASRVLISTDVWARGLDVPQVSLI
Retrocopy VIFCNTKRKVDWLTEKMREANVTVSSMHGDMPQKER<ESIVKEVRAGASRVLISTDVWARGLDVPQVSLI

Parental  INYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQID
          INYDLPNNRELYIHRIGRSGRYG..GVAINFVKNDDIRIL.D.EQY.STQ.D
Retrocopy INYDLPNNRELYIHRIGRSGRYGQQGVAINFVKNDDIRIL-DTEQYCSTQMD

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_444 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_444 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000007377	1 retrocopy	retro_mmur_525,
Microcebus murinus	ENSMICG00000009136	2 retrocopies	retro_mmur_444 , retro_mmur_50,
Microcebus murinus	ENSMICG00000014759	2 retrocopies	retro_mmur_1164, retro_mmur_1477,
Myotis lucifugus	ENSMLUG00000009585	1 retrocopy	retro_mluc_65,
Macaca mulatta	ENSMMUG00000009590	1 retrocopy	retro_mmul_851,
Monodelphis domestica	ENSMODG00000002190	1 retrocopy	retro_mdom_202,
Mus musculus	ENSMUSG00000025580	2 retrocopies	retro_mmus_2752, retro_mmus_70,
Ornithorhynchus anatinus	ENSOANG00000000334	1 retrocopy	retro_oana_47,
Otolemur garnettii	ENSOGAG00000007495	1 retrocopy	retro_ogar_212,