RetrogeneDB ID: retro_mmur_472

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3335:68815..69388(+)
• Located in intron of: ENSMICG00000000892

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ERI1
• Ensembl ID: ENSMICG00000012988
• Aliases: None
• Description: exoribonuclease 1 [Source:HGNC Symbol;Acc:23994]

Sequence

>retro_mmur_472
AGATTTGATGGCCAAGAAACAAAAGGATCTAAGTTCATTACCTCCAATGCAAGTGATTTCAGTGACCCAGTTTACAAAGA
AATTGTTATTACAAATGGTCATATTAATAGAATGAGTAAGGAAGAGCTCAGAGCTAATCTTTCAGAGTTCAAGCTTGAAA
CTAGAGGAGTAAAGGATGTACTAAAGAAGAGACTGAAAAACTATTACAAGAAGCAGAAGCTGATGTTGAAAGAGAGCAAT
TGTGCTGACAGTTATTATGACTACATTTATATTATTGACTTTGAAGCCACTTGTGAAGAGGGTAACACCCCCCCCGACTT
CATACATGACATAATTGAATTTCCTATTGTTTTATTGAATACACATACCTTAGAAATAGGAGATACATTTCAGCAGTATG
TAAGACCAGAGATTAACACACAACTTTCTGATTTCTGCATGAATCTTACTGGAATTACTCAGGATCAGGTAGACAGGGCT
GATACCTTCCCTCAGGTACTAAAAAAAGTAATTTACTGGATGAAATTGAAGGAATTAGGAACAAAGTATAAATATTGCAT
ACTAACAGATGGT

Alignment

ORF - retro_mmur_472 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 93.19 %
• Parental protein coverage: 68.48 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  RFDGQETKGSKFITSNASDFSDPVYKEIAITNGCINRMSKEELRAKLSEFKLETRGVKDVLKKRLKNYYK
          RFDGQETKGSKFITSNASDFSDPVYKEI.ITNG.INRMSKEELRA.LSEFKLETRGVKDVLKKRLKNYYK
Retrocopy RFDGQETKGSKFITSNASDFSDPVYKEIVITNGHINRMSKEELRANLSEFKLETRGVKDVLKKRLKNYYK

Parental  KQKLMLKESNCADSYYDYICIIDFEATCEEGN-PPDFIHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINT
          KQKLMLKESNCADSYYDYI.IIDFEATCEEGN...DFIH.IIEFP.VLLNTHTLEI.DTFQQYVRPEINT
Retrocopy KQKLMLKESNCADSYYDYIYIIDFEATCEEGNXXXDFIHDIIEFPIVLLNTHTLEIGDTFQQYVRPEINT

Parental  QLSDFCMNLTGITQDQVDRADT-PQVLKKVIDWMKLKQLGTKYKYCILTDG
          QLSDFCMNLTGITQDQVDRADT.PQVLKKVI.WMKLK.LGTKYKYCILTDG
Retrocopy QLSDFCMNLTGITQDQVDRADTFPQVLKKVIYWMKLKELGTKYKYCILTDG

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_472 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_472 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000012988	1 retrocopy	retro_mmur_472 ,
Mus musculus	ENSMUSG00000031527	1 retrocopy	retro_mmus_3389,