RetrogeneDB ID: retro_mmur_48

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_12997:39253..40108(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000003032
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: ABHD17A
• Ensembl ID: ENSMICG00000013508
• Aliases: None
• Description: abhydrolase domain containing 17A [Source:HGNC Symbol;Acc:28756]

Sequence

>retro_mmur_48
ATGAATAATCTTTCGGTTAGTGAGCTATGTTGCCTCTTCTGCTGTCCACCTTGCCCAGGGAAAATTGCTTCAAAATTAGC
ATTTTTGCCACCTGATCCAAAATACACACTGATGTGTGATGAAAGTGGAAGCCGCTGGACTTTACATCTGTCAGAACGAG
CAGACTGGCAGTACTCTTCTAGAGAAAAAGATGCTATTGAGTGTTTCATGGCTAGAACCAGTAAAGGCAATAGAATTGCC
TGTATGTTTGTGCGTTGCTCACCCAATGCCAAATACACTTTACTCTTCTCACATGGAAATGCTGTTGATCTTGGACAGAT
GAGCAGCTTTTACATAGGACTAGGATCACGGATTAATTGTAATATATTCTCATATGATTATTCTGGATATGGTGCAAGTT
CTGGGAAACCAACAGAGAAGAATCTCTATGCAGACATTGAAGCTGCTTGGCTTGCTCTAAGGACAAGATATGGCATTCGC
CCTGAAAATGTGATTATATATGGCCAAAGTATAGGGACAGTACCATCTGTGGACCTTGCTGCTCGGTATGAGAGTGCTGC
TGTTATTCTTCATTCTCCTTTGACCTCGGGAATGCGAGTCGCCTTTTCTGATACCAAGAAGACCTACTGTTTTGATGCAT
TCCCAAACATTGACAAAATCTCTAAGATAACCTCCCCAGTGTTAATAATTCATGGGACTGAAGATGAAGTCATTGACTTT
TCACATGGCCTTGCATTGTTCGAGCGTTGCCAAAGACCTGTGGAGCCTCTATGGGTTGAAGGAGCAGGTCACAATGATGT
GGAACTTTATGGACAGTACCTTGAAAGGTTGAAACAGTTTGTGTCACAGGAACTG

Alignment

ORF - retro_mmur_48 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 80. %
• Parental protein coverage: 58.17 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  GEVTALAFGRFCLHTRYTVLFSHGNAVDLGQMCSFYIGLGSRIHCNVFSYDYSGYGVSSGKPSEKNLYAD
          G...A..F.R......YT.LFSHGNAVDLGQM.SFYIGLGSRI.CN.FSYDYSGYG.SSGKP.EKNLYAD
Retrocopy GNRIACMFVRCSPNAKYTLLFSHGNAVDLGQMSSFYIGLGSRINCNIFSYDYSGYGASSGKPTEKNLYAD

Parental  IDAAWQALRTRYGISPDSIILYGQSIGTVPTVDLASRYECAAVVLHSPLTSGMRVAFPDTRKTYCFDAFP
          I.AAW.ALRTRYGI.P...I.YGQSIGTVP.VDLA.RYE.AAV.LHSPLTSGMRVAF.DT.KTYCFDAFP
Retrocopy IEAAWLALRTRYGIRPENVIIYGQSIGTVPSVDLAARYESAAVILHSPLTSGMRVAFSDTKKTYCFDAFP

Parental  NIEKVSKITSPVLIIHGTEDEVIDFSHGLALYERCPKAVEPLWVEGAGHNDIELYSQYLERLRRFISQEL
          NI.K.SKITSPVLIIHGTEDEVIDFSHGLAL.ERC...VEPLWVEGAGHND.ELY.QYLERL..F.SQEL
Retrocopy NIDKISKITSPVLIIHGTEDEVIDFSHGLALFERCQRPVEPLWVEGAGHNDVELYGQYLERLKQFVSQEL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_48 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_48 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Erinaceus europaeus	ENSEEUG00000001302	1 retrocopy	retro_eeur_265,
Microcebus murinus	ENSMICG00000013508	1 retrocopy	retro_mmur_48 ,