RetrogeneDB ID: retro_mmur_505

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3526:503207..503643(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SRPRB
• Ensembl ID: ENSMICG00000009618
• Aliases: None
• Description: signal recognition particle receptor, B subunit [Source:HGNC Symbol;Acc:24085]

Sequence

>retro_mmur_505
CTTGAGTTCTTAGAGTGGTTTAAGTCTTCAGCCAGGGCTCTTGTGTTTGTTGTGGATAATGCAGCATTACAATGAGAGGT
GAAAGATGTGGCTGAGTTTCTGTTTCAAGTCCTCATTGAAAGTATGAGTCTGAAAAACACACCGTCATTCTTAATAGACT
GCAATAAGCAAGATACTGCAATGGCGAAATCAGCAAAGTTAATTCAACAGCAGCTTGAAAAAGAACTTAATACCTTACGA
GTTACCCATTCTGCTGCCCCCAGCACACTGGACAGTTCCAGCACTGTCCCTGTTCAGCTGGGAAAGAAAGGCAGAGTTCG
AATTCTCACAGTTGCCTCTCAAAGTGGAGTTCCCGGAGTGTTGTGCCAAGGGTGGAAGAGGGGACACTGGCTCTGCTGAC
ATCCAGGACTTGGAGAAATGGCTGGGTAAAATTGCT

Alignment

ORF - retro_mmur_505 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 84.46 %
• Parental protein coverage: 77.66 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  LQFLERFKSSARAVVFVVDSASFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQ
          L.FLE.FKSSARA.VFVVD.A..Q.EVKDVAEFL.QVLI.SM.LKNTPSFLI.CNKQD.AMAKSAKLIQQ
Retrocopy LEFLEWFKSSARALVFVVDNAALQ*EVKDVAEFLFQVLIESMSLKNTPSFLIDCNKQDTAMAKSAKLIQQ

Parental  QLEKELNTLRVTRSAAPSTLDSSSTVPVQL-GKKGK-EFEFSQLPLKVEFLECSARGGRGDAGSADIQDL
          QLEKELNTLRVT.SAAPSTLDSSSTVPVQL.GK....EFEFSQLPLKVEF.EC.A.GGRGD.GSADIQDL
Retrocopy QLEKELNTLRVTHSAAPSTLDSSSTVPVQL<GKERQ<EFEFSQLPLKVEFPECCAKGGRGDTGSADIQDL

Parental  EKWLAKIA
          EKWL.KIA
Retrocopy EKWLGKIA

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_505 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_505 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000009618	1 retrocopy	retro_mmur_505 ,
Oryctolagus cuniculus	ENSOCUG00000007623	1 retrocopy	retro_ocun_1403,