RetrogeneDB ID: retro_mmur_51

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_5552:137595..138441(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000010915
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMICG00000007019
• Aliases: None
• Description: None

Sequence

>retro_mmur_51
TTCAGTGAGATTGAGCGGCAGGCACAGGTGGCAGAGAAGCTCCGTGAGCAGCAGGCAGCTGATGCCAAGAAGCAGGCTGA
AGAGTCCATGGTTGCCTCCATGCGCCCGGCCTACCAGGAGCTCCAGATTGATCGTAAGAAAGAGGAGAAGAAGCTACAGA
ACCTGGAAGGGAAGAAGCGAGAGCAGGCAGAAAGGTTGGGCATGGGCTTGGTATCACGAAGCTCTGTTTCCCACACGGTG
CTGTCTGAGATGCAGGTGATTGAGCAGGAAACCCCAGTGAGTGCAAAATCCTCTCGCTCGCAGCTGGACTTGTTTGATGA
TGTTGGTACTTTCGCCTCTGGACCCCCAAAGTACAAGGACAACCCCTTTTCCTTGGGGGAAAGTTTTGGTTCCCGCTGGG
ATACAGATGCTGCCTGGGATATGGACAGGGTAGAGGAGAAGGAGCCAGAAGTGACCATCTCAAGCATCCGGCCTATTTCA
GAAAGAGCCACAAACCGGAGGGAAGTGGAAGGCCGGACCTCAGGCCTCGAGTCCAGTGAGGCACGGCAGAAATTTGCAGG
AGCCAAAGCCATCTCCTCTGACATGTTCTTTGGGCGGGAGGTGGATGTTGAGTATGAAGCCAGGTCTCGGCTACAGCAGC
TCTCAGGCAGCAGCGCCATCAGCTCTTCAGACCTCTTTGGGGACATGGATGGAGCTCATGGAGCAGGAAGTGTATCTCTG
GGGAATGTGCTCCCGACAGCTGACATTGCCCAGTTTAAGCAGGGTGTGAAGTCTGTGGCTGGGAAAATGGCTGTGCTGGC
CAATGGTGTGATGAATTCGCTGCAGGATCGCTACGGTTCCTACTGA

Alignment

ORF - retro_mmur_51 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.81 %
• Parental protein coverage: 53.98 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FSEIERQAQVAEKLREQQAADAKKQAEESMVASMRLAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGL
          FSEIERQAQVAEKLREQQAADAKKQAEESMVASMR.AYQELQIDRKKEEKKLQNLEGKKREQAERLGMGL
Retrocopy FSEIERQAQVAEKLREQQAADAKKQAEESMVASMRPAYQELQIDRKKEEKKLQNLEGKKREQAERLGMGL

Parental  VSRSSVSH-VLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDTDAAWG
          VSRSSVSH.VLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDTDAAW.
Retrocopy VSRSSVSHTVLSEMQVIEQETPVSAKSSRSQLDLFDDVGTFASGPPKYKDNPFSLGESFGSRWDTDAAWD

Parental  MDRVEEKEPEVTISSIRPISERATNRREVEGRTSGLESSEARQKFAGAKAISSDMFFGREVDVEYEARSR
          MDRVEEKEPEVTISSIRPISERATNRREVEGRTSGLESSEARQKFAGAKAISSDMFFGREVDVEYEARSR
Retrocopy MDRVEEKEPEVTISSIRPISERATNRREVEGRTSGLESSEARQKFAGAKAISSDMFFGREVDVEYEARSR

Parental  LQQLSGSSAISSSDLFGDMDGAHGAGSVSLGNVLPTADIAQ--KGVKSXXXXXXXXXXXXXXXXXDRYGS
          LQQLSGSSAISSSDLFGDMDGAHGAGSVSLGNVLPTADIAQ...GVKS.................DRYGS
Retrocopy LQQLSGSSAISSSDLFGDMDGAHGAGSVSLGNVLPTADIAQFKQGVKSVAGKMAVLANGVMNSLQDRYGS

Parental  Y
          Y
Retrocopy Y

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_51 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_51 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 5 parental genes, and 6 retrocopies.

Species	Parental gene accession	Retrocopies number
Callithrix jacchus	ENSCJAG00000019965	1 retrocopy	retro_cjac_415,
Macropus eugenii	ENSMEUG00000004984	1 retrocopy	retro_meug_1841,
Microcebus murinus	ENSMICG00000007019	1 retrocopy	retro_mmur_51 ,
Mus musculus	ENSMUSG00000027255	1 retrocopy	retro_mmus_2776,
Oryctolagus cuniculus	ENSOCUG00000002073	2 retrocopies	retro_ocun_1769, retro_ocun_599,