RetrogeneDB ID: retro_mmur_553

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3826:417122..418146(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: SEL1L2
• Ensembl ID: ENSMICG00000011457
• Aliases: None
• Description: sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:15897]

Sequence

>retro_mmur_553
TATTTAGATGGGAATGCTGCACACCCCAAAATAACACCACTTCCTTCAAATACTTTTTCATGGCAGCCAATAAGGGCAAT
GCAATTGGTCTTCATGGGCTTGGTCTTCTTTACTTTTATGGAAAAGGAGTTGCCGTGAATTATTCTGAAGAACTTAAATA
CTTCAAAAAGCTGCAGAGAAAGGGTGGCCCAATGCACAGTTCCAGTTAGGCTTCATGTACTACTCTGGCTCTGGAGTATG
GAAGGATTATAAAATTGCCTTCAAATATTTTTACTTGGCATCGCAGAGCAGGCAGCCCTTCACCATTTATTATCTGGCCA
AGATATATGCGATAGGAACAGGAGTGTTACAATCATGCAGAACTGCTGTGGAGCTATATAAAGGTGTCTGTGAACTAGGC
CACTGGGCTGAGAAATTCCTGACAGCTTACTTTGTCTATAAGGATGGTAATATAGATTCTTCTCTTATTCAGTATGCACT
GTTTGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTAAAAATGCTAAAATTCTCGGAA
AAGAGAAGATGTATCCAATGGCACTTGTCCTATGGAATCGAGCTGTGATTCAAGGCAATGCATTTGCTAGAGTAAAAATT
GGAGATTACCACTACTATGGCTACGAGACTAAGAAAGACTATCAAACAGCAGCCACACATTATGGCATCGCAGCTGACAA
ATACCACAGTGCACAAGCCATGTTCAGTCTGGCCTACATGTATGAACACGGCTTGGGTATTGCAAAGGACATTCACTTGG
CCAGGAGATTATATGACATGGCTGCTCAAACAAGTCCAGATGCTCACATACCTGTGTTCTTTGCCCTCATGAAACTGGAA
ACTGTGCATATGCTCCAAGATATTCTGCTTTTTAATTTTACAATGAGATGGAAATGGATGAAATTGGACAACATCCTTGA
ACCATACCGGGATTTATTTATGATTGGCCTAATTGTTGCTGTGCTGATTTTCCTGCTTAGAAAT

Alignment

ORF - retro_mmur_553 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 91.86 %
• Parental protein coverage: 51.27 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  YLEGNAA-APQNNATAFKYFSMAANKGNAIGLHGLGLLYFYGKGVAVNYSEALKYF-QKAAEKGWPNAQF
          YL.GNAA..PQNN.T.FKYF.MAANKGNAIGLHGLGLLYFYGKGVAVNYSE.LKYF.QKAAEKGWPNAQF
Retrocopy YLDGNAA<TPQNNTTSFKYFFMAANKGNAIGLHGLGLLYFYGKGVAVNYSEELKYF<QKAAEKGWPNAQF

Parental  QLGFMYYSGSGVWKDYKIAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAE
          QLGFMYYSGSGVWKDYKIAFKYFYLASQS.QP..IYYLA..YA.GTGVL.SCRTAVELYKGVCELGHWAE
Retrocopy QLGFMYYSGSGVWKDYKIAFKYFYLASQSRQPFTIYYLAKIYAIGTGVLQSCRTAVELYKGVCELGHWAE

Parental  KFLTAYFAYKDGDIDSSLIQYALLAEMGYEVAQSNSAFILESKKAKILEKEKMYPMALLLWNRAAIQGNA
          KFLTAYF.YKDG.IDSSLIQYAL.AEMGYEVAQSNSAFILESK.AKIL.KEKMYPMAL.LWNRA.IQGNA
Retrocopy KFLTAYFVYKDGNIDSSLIQYALFAEMGYEVAQSNSAFILESKNAKILGKEKMYPMALVLWNRAVIQGNA

Parental  FARVKIGDYHYYGYGTKKDYQTAATHYGIAADKYHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQT
          FARVKIGDYHYYGY.TKKDYQTAATHYGIAADKYHSAQAMF.LAYMYEHGLGIAKDIHLARRLYDMAAQT
Retrocopy FARVKIGDYHYYGYETKKDYQTAATHYGIAADKYHSAQAMFSLAYMYEHGLGIAKDIHLARRLYDMAAQT

Parental  SPDAHIPVFFALMKLDTVHMLRDILLFNFTMRWKWMKLDNILGPYWDLFMIGLIVAVLIFLLRN
          SPDAHIPVFFALMKL.TVHML.DILLFNFTMRWKWMKLDNIL.PY.DLFMIGLIVAVLIFLLRN
Retrocopy SPDAHIPVFFALMKLETVHMLQDILLFNFTMRWKWMKLDNILEPYRDLFMIGLIVAVLIFLLRN

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_553 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_553 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 1 parental gene, and 1 retrocopy.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000011457	1 retrocopy	retro_mmur_553 ,