RetrogeneDB ID: | retro_mmur_553 | ||
Retrocopy location | Organism: | Mouse Lemur (Microcebus murinus) | |
| Coordinates: | GeneScaffold_3826:417122..418146(-) | ||
| Located in intron of: | None | ||
Retrocopy information | Ensembl ID: | None | |
| Aliases: | None | ||
| Status: | NOVEL | ||
Parental gene information | Parental gene summary: | ||
| Parental gene symbol: | SEL1L2 | ||
| Ensembl ID: | ENSMICG00000011457 | ||
| Aliases: | None | ||
| Description: | sel-1 suppressor of lin-12-like 2 (C. elegans) [Source:HGNC Symbol;Acc:15897] |
Retrocopy-Parental alignment summary:
>retro_mmur_553
TATTTAGATGGGAATGCTGCACACCCCAAAATAACACCACTTCCTTCAAATACTTTTTCATGGCAGCCAATAAGGGCAAT
GCAATTGGTCTTCATGGGCTTGGTCTTCTTTACTTTTATGGAAAAGGAGTTGCCGTGAATTATTCTGAAGAACTTAAATA
CTTCAAAAAGCTGCAGAGAAAGGGTGGCCCAATGCACAGTTCCAGTTAGGCTTCATGTACTACTCTGGCTCTGGAGTATG
GAAGGATTATAAAATTGCCTTCAAATATTTTTACTTGGCATCGCAGAGCAGGCAGCCCTTCACCATTTATTATCTGGCCA
AGATATATGCGATAGGAACAGGAGTGTTACAATCATGCAGAACTGCTGTGGAGCTATATAAAGGTGTCTGTGAACTAGGC
CACTGGGCTGAGAAATTCCTGACAGCTTACTTTGTCTATAAGGATGGTAATATAGATTCTTCTCTTATTCAGTATGCACT
GTTTGCAGAAATGGGGTATGAAGTAGCTCAAAGCAATTCAGCATTCATTTTGGAATCTAAAAATGCTAAAATTCTCGGAA
AAGAGAAGATGTATCCAATGGCACTTGTCCTATGGAATCGAGCTGTGATTCAAGGCAATGCATTTGCTAGAGTAAAAATT
GGAGATTACCACTACTATGGCTACGAGACTAAGAAAGACTATCAAACAGCAGCCACACATTATGGCATCGCAGCTGACAA
ATACCACAGTGCACAAGCCATGTTCAGTCTGGCCTACATGTATGAACACGGCTTGGGTATTGCAAAGGACATTCACTTGG
CCAGGAGATTATATGACATGGCTGCTCAAACAAGTCCAGATGCTCACATACCTGTGTTCTTTGCCCTCATGAAACTGGAA
ACTGTGCATATGCTCCAAGATATTCTGCTTTTTAATTTTACAATGAGATGGAAATGGATGAAATTGGACAACATCCTTGA
ACCATACCGGGATTTATTTATGATTGGCCTAATTGTTGCTGTGCTGATTTTCCTGCTTAGAAAT
ORF - retro_mmur_553 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
| Percent Identity: | 91.86 % |
| Parental protein coverage: | 51.27 % |
| Number of stop codons detected: | 0 |
| Number of frameshifts detected: | 2 |
Retrocopy - Parental Gene Alignment:
| Parental | YLEGNAA-APQNNATAFKYFSMAANKGNAIGLHGLGLLYFYGKGVAVNYSEALKYF-QKAAEKGWPNAQF |
| YL.GNAA..PQNN.T.FKYF.MAANKGNAIGLHGLGLLYFYGKGVAVNYSE.LKYF.QKAAEKGWPNAQF | |
| Retrocopy | YLDGNAA<TPQNNTTSFKYFFMAANKGNAIGLHGLGLLYFYGKGVAVNYSEELKYF<QKAAEKGWPNAQF |
| Parental | QLGFMYYSGSGVWKDYKIAFKYFYLASQSGQPLAIYYLAEMYATGTGVLRSCRTAVELYKGVCELGHWAE |
| QLGFMYYSGSGVWKDYKIAFKYFYLASQS.QP..IYYLA..YA.GTGVL.SCRTAVELYKGVCELGHWAE | |
| Retrocopy | QLGFMYYSGSGVWKDYKIAFKYFYLASQSRQPFTIYYLAKIYAIGTGVLQSCRTAVELYKGVCELGHWAE |
| Parental | KFLTAYFAYKDGDIDSSLIQYALLAEMGYEVAQSNSAFILESKKAKILEKEKMYPMALLLWNRAAIQGNA |
| KFLTAYF.YKDG.IDSSLIQYAL.AEMGYEVAQSNSAFILESK.AKIL.KEKMYPMAL.LWNRA.IQGNA | |
| Retrocopy | KFLTAYFVYKDGNIDSSLIQYALFAEMGYEVAQSNSAFILESKNAKILGKEKMYPMALVLWNRAVIQGNA |
| Parental | FARVKIGDYHYYGYGTKKDYQTAATHYGIAADKYHSAQAMFNLAYMYEHGLGIAKDIHLARRLYDMAAQT |
| FARVKIGDYHYYGY.TKKDYQTAATHYGIAADKYHSAQAMF.LAYMYEHGLGIAKDIHLARRLYDMAAQT | |
| Retrocopy | FARVKIGDYHYYGYETKKDYQTAATHYGIAADKYHSAQAMFSLAYMYEHGLGIAKDIHLARRLYDMAAQT |
| Parental | SPDAHIPVFFALMKLDTVHMLRDILLFNFTMRWKWMKLDNILGPYWDLFMIGLIVAVLIFLLRN |
| SPDAHIPVFFALMKL.TVHML.DILLFNFTMRWKWMKLDNIL.PY.DLFMIGLIVAVLIFLLRN | |
| Retrocopy | SPDAHIPVFFALMKLETVHMLQDILLFNFTMRWKWMKLDNILEPYRDLFMIGLIVAVLIFLLRN |
Legend:
| * | Stop codon |
| > | Forward frameshift by one nucleotide |
| < | Reverse frameshift by one nucleotide |
Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_553 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_553 was not experimentally validated.
Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.Parental genes homology:
Parental genes homology involve 1 parental gene, and 1 retrocopy.| Species | Parental gene accession | Retrocopies number | |
|---|---|---|---|
| Microcebus murinus | ENSMICG00000011457 | 1 retrocopy |
retro_mmur_553 ,
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