RetrogeneDB ID: retro_mmur_566

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_3879:762411..763260(-)
• Located in intron of: ENSMICG00000008884

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: ETNPPL
• Ensembl ID: ENSMICG00000002187
• Aliases: None
• Description: ethanolamine-phosphate phospho-lyase [Source:HGNC Symbol;Acc:14404]

Sequence

>retro_mmur_566
CCCTCATGCAAAGTTTTCTTTGCTGCAGATGCCATGAAAATAGTGCGAGCCCAGAGGCAGTACATGTTTGATGAGAAGGG
TGAATGTTATCTGGATTGCAACAACAACATTGCCCACGTGGGACATTGTCACCCAGAAGTGGTCAAAGCTGCCCTGAAGC
AGATGGAGCTGCTCAATACGAATTCCTGATTTCTCCACGACAACATTGTTGAGTATGCCAAGTGCCTTTCAACAAGTCTG
CCGGAGAAACTCTCTGTTTGCTATTGTACTAAATCAGGATCTGAAGCCAATGACTTAGCCTTACACCTGGCCTGGCAGTT
CAGAGGCCACCATTAAGTGATCACTCTTGAGCATCCTTACCATGGCCACCTATCATCCTTAATTGAGATCAGTCTGTGCA
AGTTTTGGAAGGGCAAAGATGTCAAGAAAGAATCTGTACATGTGGCACCAGTTCCAGATACTTACAGGGGAAAATACAGA
GAAGACCACCCAGACACAGCCGCTGCATATGCAGAAGAAGTAAAGAACGTCATTGAAGAAGCGCATAACAGCGGAAGGAA
GATTGCTGCCTTTATTCCTGAATCCTTGCAGAGTTGTGGCGGACAAATAATTCCTCCAGCAGGCTACTTCCAGAAAGTGG
CAGCATATGTGCGTGGAGCAGGGGGTGTGTCTATGGTGGAGGAAGTTCAGGTAGGCTTTGGGAAACATTTCTGGAGCTTC
CAAATGCATGGCGAAGACTTTGTTCCAGACATCATCACTATGGGGAAACCAGTGGGCAACGGCTACCCCATGGCTTGTGC
GGTCACAACCAAAGACGTTGCGGAAGCGTTCAGCAGCTCTGGGATGGAA

Alignment

ORF - retro_mmur_566 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 83.57 %
• Parental protein coverage: 59.58 %
• Number of stop codons detected: 2
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  PSCKVFFAADPVKIVRAQRQYMFDEKGERYLDCINNVAHVGHCHPEVVRAALKQMELLNTNSRFLHDNIV
          PSCKVFFAAD..KIVRAQRQYMFDEKGE.YLDC.NN.AHVGHCHPEVV.AALKQMELLNTNS.FLHDNIV
Retrocopy PSCKVFFAADAMKIVRAQRQYMFDEKGECYLDCNNNIAHVGHCHPEVVKAALKQMELLNTNS*FLHDNIV

Parental  EYAKRLSATLPEKLSVCYFTNSGSEANDLALRLARQFRGHQDVITLXXAYHGHLSSLIEISPYKFRKGKD
          EYAK.LS..LPEKLSVCY.T.SGSEANDLAL.LA.QFRGH..VITL...YHGHLSSLIEIS..KF.KGKD
Retrocopy EYAKCLSTSLPEKLSVCYCTKSGSEANDLALHLAWQFRGHH*VITLEHPYHGHLSSLIEISLCKFWKGKD

Parental  VKKEFVHVAPVPDTYRGKYREDHADPAAAYAEEVKSIIEEAQDSGRKIAAFIAESMQSCGGQIIPPAGYF
          VKKE.VHVAPVPDTYRGKYREDH.D.AAAYAEEVK..IEEA..SGRKIAAFI.ES.QSCGGQIIPPAGYF
Retrocopy VKKESVHVAPVPDTYRGKYREDHPDTAAAYAEEVKNVIEEAHNSGRKIAAFIPESLQSCGGQIIPPAGYF

Parental  QKVAEYVRGAGGVFIADEVQVGFGRVGSHFWSFQMHGEDFVPDIVTMGKPMGNGHPMACVVTTREIAEAF
          QKVA.YVRGAGGV....EVQVGFG....HFWSFQMHGEDFVPDI.TMGKP.GNG.PMAC.VTT...AEAF
Retrocopy QKVAAYVRGAGGVSMVEEVQVGFGK---HFWSFQMHGEDFVPDIITMGKPVGNGYPMACAVTTKDVAEAF

Parental  SSSGME
          SSSGME
Retrocopy SSSGME

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_566 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_566 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 2 parental genes, and 2 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000012630	1 retrocopy	retro_chof_1329,
Microcebus murinus	ENSMICG00000002187	1 retrocopy	retro_mmur_566 ,