RetrogeneDB ID: retro_mmur_590

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4069:771785..772620(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: RBMX2
• Ensembl ID: ENSMICG00000015139
• Aliases: None
• Description: RNA binding motif protein, X-linked 2 [Source:HGNC Symbol;Acc:24282]

Sequence

>retro_mmur_590
AACCCTTTAACTAAGGCGAAGCTGACCAGCGAGCTGAATGAGCGAGAGGTCCGGCTTGGGGTGCCCGATAAGGTGTCCTG
GCACTCCGAGTACAAGGACAGCGCCTGGATCTTCCTGGGAGGGCTTCCTTATGAATTGACTGAAGGAGACATCATCTGTG
TTTTCTCACAGTATGGGGAGATTGTTAACATTAATCTCGTGCGGGACAAGAAGACTGGGAAGTCCAAAGGATTCTGTTTC
CTCTGCTACGAAGACCAGAGAAGCACAATTCTGGCAGTTGACAATTTTAATGGAATCAAGATTAAAGGGCGAACTATCCG
ACTGGATCATGTATCTACCTATCGGGCTCCCAAGGACTCAGAAGAACTGGAGGATGTGACCAGAGAGCTCCAAGACAAGG
GCTGTGGGGCTCGTACCCCCTCACCGAGTTTGTCTGAGGGCTCTGAAGATGACAGACCCACAAAAAGAAGAAGAGGAAAA
AGAGAGGACTGACCGGGCAGTACAGGCAGAGCAGCCGTCCTCTTCATCACCCAGAAGCAAGGCAATAAAGGAGAAGGATG
GCCCTGGCCCTAAGAAGCACAGCAGCAAGAACTCCGAGAGAGTTGAGAAGCCAGAGTCCAAGGAGGGCCAGAAGCGCTAC
TCGACCTCCCCTGAGGCCAGGACCACCTGGCGTGGTGGAGCAGAGGACCTGGAGAGGGAGCCAGAGGAGAAACCCAAACG
TGAGCACAAGTCCTCAAGCAGGAAGGAGGCAAGAGAAGAAAAGAACAGGGATAGGGACAGAGGGCGAAGCTCAGACACAC
ATTCTGGCTGGAACAGACGTTCTGAACACCAACTT

Alignment

ORF - retro_mmur_590 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 58.21 %
• Parental protein coverage: 79.04 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  SPLTKVKLINELNEREVQLGVADKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDK
          .PLTK.KL..ELNEREV.LGV.DKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDK
Retrocopy NPLTKAKLTSELNEREVRLGVPDKVSWHSEYKDSAWIFLGGLPYELTEGDIICVFSQYGEIVNINLVRDK

Parental  KTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRVDHVSNYRAPKDSEELDDVTRELQEKGCGARTP
          KTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIR.DHVS.YRAPKDSEEL.DVTRELQ.KGCGARTP
Retrocopy KTGKSKGFCFLCYEDQRSTILAVDNFNGIKIKGRTIRLDHVSTYRAPKDSEELEDVTRELQDKGCGARTP

Parental  PLSFSEGSEDDKPTKHKK-EKKEKKKRKKEKEKTDWAVQAEQPSSSSSPRSKAIKEKDEPGPKKHSSKNS
          ..S.SEGSEDD.PTK....EK...........................P..K....K......K..SK..
Retrocopy SPSLSEGSEDDRPTKRRR>EKERTDRAVQAEQPSSSSPRSKAIKEKDGPGPKKHSSKNSERVEKPESKEG

Parental  ERVQKPESKEGRKRYSASPEARTTWRGGAEDLEREPKKEKPKREHKSSSRREAREEKNRDRDRGRQIHIL
          .......S.E.R.......E............E......K..RE.K...R...R..........R..H.L
Retrocopy QK-RYSTSPEARTTWRGGAEDLEREPEEKPKREHKSSSRKEAREEKNRDRDRGRSSDTHSGWNRRSEHQL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_590 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_590 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 3 parental genes, and 3 retrocopies.

Species	Parental gene accession	Retrocopies number
Microcebus murinus	ENSMICG00000015139	1 retrocopy	retro_mmur_590 ,
Myotis lucifugus	ENSMLUG00000017095	1 retrocopy	retro_mluc_310,
Sarcophilus harrisii	ENSSHAG00000016412	1 retrocopy	retro_shar_2,