RetrogeneDB ID: retro_mmur_607

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: GeneScaffold_4154:501064..501379(-)
• Located in intron of: ENSMICG00000006444

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: COMMD10
• Ensembl ID: ENSMICG00000006173
• Aliases: None
• Description: COMM domain containing 10 [Source:HGNC Symbol;Acc:30201]

Sequence

>retro_mmur_607
CATGTGAAGCCAACAGCTTTGCAGCAGCAATTAGAGAACATCCATCTTACACAAGACAAAGCAGAAGCATTTGTGAACGC
TTGGTCTTTGATGGGTCAAGAAATGGTTGAAAAGTTCACGCAGAGGATTCTTGCTCCCCAAGAGCTAGAGATTGTTGGAT
GGCAGCTTAACCTTCAAATGGCTCAGTCTGCTCAAGCAAAACTAAAATCTCCTCAAGCTGTGTTACAACTAGGAGTGAGC
AATGAAGATTCAAAGAACCTAGAGAAAGTTCTTGTGGAATGCACTCACAAGGAGTTGTTTGATTTCTATACCAAG

Alignment

ORF - retro_mmur_607 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 88.57 %
• Parental protein coverage: 55.26 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  NVKPTALQQQLENIHLRQDKAEAFVNAWSSMGQETVEKFRQRVLAPQKLETVGWQLNLQMAHSAQAKLKS
          .VKPTALQQQLENIHL.QDKAEAFVNAWS.MGQE.VEKF.QR.LAPQ.LE.VGWQLNLQMA.SAQAKLKS
Retrocopy HVKPTALQQQLENIHLTQDKAEAFVNAWSLMGQEMVEKFTQRILAPQELEIVGWQLNLQMAQSAQAKLKS

Parental  PQAVLQLGVSNEDSKNLEKVLVEFSHKELFDFYNK
          PQAVLQLGVSNEDSKNLEKVLVE..HKELFDFY.K
Retrocopy PQAVLQLGVSNEDSKNLEKVLVECTHKELFDFYTK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_607 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_607 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 9 retrocopies.

Species	Parental gene accession	Retrocopies number
Choloepus hoffmanni	ENSCHOG00000008311	2 retrocopies	retro_chof_1462, retro_chof_1585,
Cavia porcellus	ENSCPOG00000020474	1 retrocopy	retro_cpor_337,
Loxodonta africana	ENSLAFG00000011885	1 retrocopy	retro_lafr_142,
Microcebus murinus	ENSMICG00000006173	2 retrocopies	retro_mmur_1132, retro_mmur_607 ,
Myotis lucifugus	ENSMLUG00000010780	1 retrocopy	retro_mluc_2087,
Sarcophilus harrisii	ENSSHAG00000001698	1 retrocopy	retro_shar_261,
Tupaia belangeri	ENSTBEG00000004061	1 retrocopy	retro_tbel_3381,